Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19285

Experiment: Furfuryl Alcohol 0.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_19280 and AO353_19285 are separated by 566 nucleotidesAO353_19285 and AO353_19290 are separated by 101 nucleotidesAO353_19290 and AO353_19295 are separated by 69 nucleotides AO353_19280: AO353_19280 - hypothetical protein, at 4,226,153 to 4,226,623 _19280 AO353_19285: AO353_19285 - chemotaxis protein CheW, at 4,227,190 to 4,228,125 _19285 AO353_19290: AO353_19290 - molybdenum cofactor sulfurase, at 4,228,227 to 4,229,033 _19290 AO353_19295: AO353_19295 - hypothetical protein, at 4,229,103 to 4,229,387 _19295 Position (kb) 4227 4228 4229Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4226.258 kb on + strand, within AO353_19280at 4226.258 kb on + strand, within AO353_19280at 4226.258 kb on + strand, within AO353_19280at 4226.258 kb on + strand, within AO353_19280at 4226.259 kb on - strand, within AO353_19280at 4226.608 kb on + strandat 4226.680 kb on + strandat 4226.680 kb on + strandat 4226.680 kb on + strandat 4226.681 kb on - strandat 4226.681 kb on - strandat 4226.685 kb on + strandat 4226.685 kb on + strandat 4226.685 kb on + strandat 4226.685 kb on + strandat 4226.685 kb on + strandat 4226.686 kb on - strandat 4226.686 kb on - strandat 4226.711 kb on + strandat 4226.834 kb on + strandat 4226.834 kb on + strandat 4226.834 kb on + strandat 4226.834 kb on + strandat 4226.834 kb on + strandat 4226.834 kb on + strandat 4226.834 kb on + strandat 4226.834 kb on + strandat 4226.835 kb on - strandat 4226.835 kb on - strandat 4226.878 kb on + strandat 4226.878 kb on + strandat 4226.878 kb on + strandat 4226.878 kb on + strandat 4226.935 kb on + strandat 4226.942 kb on + strandat 4226.959 kb on - strandat 4226.959 kb on - strandat 4227.055 kb on + strandat 4227.067 kb on + strandat 4227.212 kb on + strandat 4227.212 kb on + strandat 4227.212 kb on + strandat 4227.212 kb on + strandat 4227.212 kb on + strandat 4227.212 kb on + strandat 4227.212 kb on + strandat 4227.212 kb on + strandat 4227.213 kb on - strandat 4227.213 kb on - strandat 4227.213 kb on - strandat 4227.213 kb on - strandat 4227.213 kb on - strandat 4227.213 kb on - strandat 4227.213 kb on - strandat 4227.213 kb on - strandat 4227.213 kb on - strandat 4227.284 kb on + strand, within AO353_19285at 4227.284 kb on + strand, within AO353_19285at 4227.285 kb on - strand, within AO353_19285at 4227.285 kb on - strand, within AO353_19285at 4227.285 kb on - strand, within AO353_19285at 4227.285 kb on - strand, within AO353_19285at 4227.285 kb on - strand, within AO353_19285at 4227.478 kb on + strand, within AO353_19285at 4227.478 kb on + strandat 4227.479 kb on - strand, within AO353_19285at 4227.479 kb on - strand, within AO353_19285at 4227.479 kb on - strand, within AO353_19285at 4227.479 kb on - strand, within AO353_19285at 4227.546 kb on + strand, within AO353_19285at 4227.546 kb on + strand, within AO353_19285at 4227.547 kb on - strand, within AO353_19285at 4227.547 kb on - strand, within AO353_19285at 4227.547 kb on - strand, within AO353_19285at 4227.547 kb on - strand, within AO353_19285at 4227.583 kb on + strand, within AO353_19285at 4227.583 kb on + strand, within AO353_19285at 4227.583 kb on + strand, within AO353_19285at 4227.584 kb on - strand, within AO353_19285at 4227.584 kb on - strand, within AO353_19285at 4227.664 kb on + strand, within AO353_19285at 4227.664 kb on + strand, within AO353_19285at 4227.664 kb on + strand, within AO353_19285at 4227.664 kb on + strand, within AO353_19285at 4227.664 kb on + strand, within AO353_19285at 4227.664 kb on + strand, within AO353_19285at 4227.664 kb on + strand, within AO353_19285at 4227.664 kb on + strand, within AO353_19285at 4227.664 kb on + strand, within AO353_19285at 4227.664 kb on + strand, within AO353_19285at 4227.664 kb on + strand, within AO353_19285at 4227.664 kb on + strand, within AO353_19285at 4227.665 kb on - strand, within AO353_19285at 4227.665 kb on - strand, within AO353_19285at 4227.665 kb on - strand, within AO353_19285at 4227.665 kb on - strand, within AO353_19285at 4227.665 kb on - strand, within AO353_19285at 4227.976 kb on + strand, within AO353_19285at 4227.976 kb on + strand, within AO353_19285at 4227.976 kb on + strand, within AO353_19285at 4227.977 kb on - strand, within AO353_19285at 4227.977 kb on - strand, within AO353_19285at 4227.990 kb on + strand, within AO353_19285at 4227.990 kb on + strand, within AO353_19285at 4227.990 kb on + strand, within AO353_19285at 4227.990 kb on + strand, within AO353_19285at 4227.990 kb on + strand, within AO353_19285at 4227.991 kb on - strand, within AO353_19285at 4227.991 kb on - strandat 4227.991 kb on - strand, within AO353_19285at 4228.150 kb on - strandat 4228.150 kb on - strandat 4228.191 kb on + strandat 4228.191 kb on + strandat 4228.191 kb on + strandat 4228.191 kb on + strandat 4228.191 kb on + strandat 4228.191 kb on + strandat 4228.191 kb on + strandat 4228.191 kb on + strandat 4228.191 kb on + strandat 4228.191 kb on + strandat 4228.191 kb on + strandat 4228.191 kb on + strandat 4228.192 kb on - strandat 4228.192 kb on - strandat 4228.192 kb on - strandat 4228.192 kb on - strandat 4228.192 kb on - strandat 4228.192 kb on - strandat 4228.192 kb on - strandat 4228.192 kb on - strandat 4228.192 kb on - strandat 4228.193 kb on + strandat 4228.194 kb on - strandat 4228.248 kb on + strandat 4228.415 kb on + strand, within AO353_19290at 4228.415 kb on + strand, within AO353_19290at 4228.415 kb on + strand, within AO353_19290at 4228.416 kb on - strand, within AO353_19290at 4228.518 kb on - strandat 4228.652 kb on + strand, within AO353_19290at 4228.935 kb on + strand, within AO353_19290at 4228.936 kb on - strand, within AO353_19290at 4228.936 kb on - strand, within AO353_19290at 4229.039 kb on + strandat 4229.039 kb on + strandat 4229.113 kb on + strandat 4229.125 kb on + strandat 4229.125 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.25 vol%
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4,226,258 + AO353_19280 0.22 +0.1
4,226,258 + AO353_19280 0.22 +0.3
4,226,258 + AO353_19280 0.22 -0.7
4,226,258 + AO353_19280 0.22 +2.1
4,226,259 - AO353_19280 0.23 -2.0
4,226,608 + +0.6
4,226,680 + +0.8
4,226,680 + -0.2
4,226,680 + +0.0
4,226,681 - -0.6
4,226,681 - +0.1
4,226,685 + -0.2
4,226,685 + +1.3
4,226,685 + +0.5
4,226,685 + +0.0
4,226,685 + -0.0
4,226,686 - +1.4
4,226,686 - +1.3
4,226,711 + -1.7
4,226,834 + -0.2
4,226,834 + +0.8
4,226,834 + +0.4
4,226,834 + +1.4
4,226,834 + +0.3
4,226,834 + +0.3
4,226,834 + -0.7
4,226,834 + +0.6
4,226,835 - +0.8
4,226,835 - +1.0
4,226,878 + +0.5
4,226,878 + +1.4
4,226,878 + -0.7
4,226,878 + +1.6
4,226,935 + +1.7
4,226,942 + +0.6
4,226,959 - +0.1
4,226,959 - -0.4
4,227,055 + -0.5
4,227,067 + -2.6
4,227,212 + +0.1
4,227,212 + -0.1
4,227,212 + +0.8
4,227,212 + -2.0
4,227,212 + +0.8
4,227,212 + +0.9
4,227,212 + +0.3
4,227,212 + -1.5
4,227,213 - +0.8
4,227,213 - -0.4
4,227,213 - +0.3
4,227,213 - +0.2
4,227,213 - +0.5
4,227,213 - -0.2
4,227,213 - -0.2
4,227,213 - +0.7
4,227,213 - +1.0
4,227,284 + AO353_19285 0.10 -0.3
4,227,284 + AO353_19285 0.10 -0.4
4,227,285 - AO353_19285 0.10 +0.5
4,227,285 - AO353_19285 0.10 +0.3
4,227,285 - AO353_19285 0.10 +1.4
4,227,285 - AO353_19285 0.10 +0.1
4,227,285 - AO353_19285 0.10 -0.2
4,227,478 + AO353_19285 0.31 +0.8
4,227,478 + +1.8
4,227,479 - AO353_19285 0.31 -0.7
4,227,479 - AO353_19285 0.31 -1.0
4,227,479 - AO353_19285 0.31 +0.8
4,227,479 - AO353_19285 0.31 +1.3
4,227,546 + AO353_19285 0.38 +0.3
4,227,546 + AO353_19285 0.38 +0.6
4,227,547 - AO353_19285 0.38 -1.3
4,227,547 - AO353_19285 0.38 +0.8
4,227,547 - AO353_19285 0.38 +0.3
4,227,547 - AO353_19285 0.38 +0.3
4,227,583 + AO353_19285 0.42 +1.1
4,227,583 + AO353_19285 0.42 +2.1
4,227,583 + AO353_19285 0.42 +0.8
4,227,584 - AO353_19285 0.42 +0.0
4,227,584 - AO353_19285 0.42 +1.6
4,227,664 + AO353_19285 0.51 -0.5
4,227,664 + AO353_19285 0.51 +0.3
4,227,664 + AO353_19285 0.51 -0.5
4,227,664 + AO353_19285 0.51 +0.4
4,227,664 + AO353_19285 0.51 -0.2
4,227,664 + AO353_19285 0.51 +1.8
4,227,664 + AO353_19285 0.51 -1.2
4,227,664 + AO353_19285 0.51 -0.6
4,227,664 + AO353_19285 0.51 -0.4
4,227,664 + AO353_19285 0.51 -1.5
4,227,664 + AO353_19285 0.51 +1.8
4,227,664 + AO353_19285 0.51 +0.5
4,227,665 - AO353_19285 0.51 -0.9
4,227,665 - AO353_19285 0.51 -0.2
4,227,665 - AO353_19285 0.51 +0.3
4,227,665 - AO353_19285 0.51 +0.8
4,227,665 - AO353_19285 0.51 -0.7
4,227,976 + AO353_19285 0.84 +0.5
4,227,976 + AO353_19285 0.84 -1.0
4,227,976 + AO353_19285 0.84 +0.2
4,227,977 - AO353_19285 0.84 +0.0
4,227,977 - AO353_19285 0.84 +0.8
4,227,990 + AO353_19285 0.85 +0.6
4,227,990 + AO353_19285 0.85 +0.8
4,227,990 + AO353_19285 0.85 +0.2
4,227,990 + AO353_19285 0.85 +0.8
4,227,990 + AO353_19285 0.85 -0.5
4,227,991 - AO353_19285 0.86 +0.3
4,227,991 - +0.4
4,227,991 - AO353_19285 0.86 -0.7
4,228,150 - +0.4
4,228,150 - -0.4
4,228,191 + +0.0
4,228,191 + -0.3
4,228,191 + +0.6
4,228,191 + +0.8
4,228,191 + -1.0
4,228,191 + +0.6
4,228,191 + +0.5
4,228,191 + -0.7
4,228,191 + -1.0
4,228,191 + +0.6
4,228,191 + +0.4
4,228,191 + +0.3
4,228,192 - +0.8
4,228,192 - +0.3
4,228,192 - -1.0
4,228,192 - +0.5
4,228,192 - -0.2
4,228,192 - -0.5
4,228,192 - -0.2
4,228,192 - +0.6
4,228,192 - -0.2
4,228,193 + +1.8
4,228,194 - +1.4
4,228,248 + -0.9
4,228,415 + AO353_19290 0.23 -2.0
4,228,415 + AO353_19290 0.23 +0.1
4,228,415 + AO353_19290 0.23 +0.7
4,228,416 - AO353_19290 0.23 -0.7
4,228,518 - +0.8
4,228,652 + AO353_19290 0.53 -0.3
4,228,935 + AO353_19290 0.88 +1.4
4,228,936 - AO353_19290 0.88 -0.9
4,228,936 - AO353_19290 0.88 -1.5
4,229,039 + -1.0
4,229,039 + +0.8
4,229,113 + +3.6
4,229,125 + -0.3
4,229,125 + -0.6

Or see this region's nucleotide sequence