Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00850

Experiment: Furfuryl Alcohol 0.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00845 and AO353_00850 are separated by 26 nucleotidesAO353_00850 and AO353_00855 are separated by 84 nucleotidesAO353_00855 and AO353_00860 are separated by 100 nucleotides AO353_00845: AO353_00845 - CmaX protein, at 192,045 to 193,040 _00845 AO353_00850: AO353_00850 - ribonuclease activity regulator protein RraA, at 193,067 to 193,558 _00850 AO353_00855: AO353_00855 - Rieske iron-sulfur protein, at 193,643 to 193,942 _00855 AO353_00860: AO353_00860 - EstX protein, at 194,043 to 195,032 _00860 Position (kb) 193 194Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 192.162 kb on + strand, within AO353_00845at 192.162 kb on + strand, within AO353_00845at 192.163 kb on - strand, within AO353_00845at 192.163 kb on - strand, within AO353_00845at 192.163 kb on - strand, within AO353_00845at 192.163 kb on - strand, within AO353_00845at 192.163 kb on - strand, within AO353_00845at 192.164 kb on + strand, within AO353_00845at 192.226 kb on + strand, within AO353_00845at 192.320 kb on - strand, within AO353_00845at 192.353 kb on - strand, within AO353_00845at 192.489 kb on - strand, within AO353_00845at 192.489 kb on - strand, within AO353_00845at 192.490 kb on + strand, within AO353_00845at 192.491 kb on - strand, within AO353_00845at 192.491 kb on - strand, within AO353_00845at 192.566 kb on + strand, within AO353_00845at 192.567 kb on - strand, within AO353_00845at 192.567 kb on - strand, within AO353_00845at 192.577 kb on + strand, within AO353_00845at 192.578 kb on - strand, within AO353_00845at 192.578 kb on - strand, within AO353_00845at 192.578 kb on - strand, within AO353_00845at 192.578 kb on - strand, within AO353_00845at 192.587 kb on + strand, within AO353_00845at 192.588 kb on - strand, within AO353_00845at 192.589 kb on + strand, within AO353_00845at 192.589 kb on + strand, within AO353_00845at 192.589 kb on + strand, within AO353_00845at 192.589 kb on + strand, within AO353_00845at 192.589 kb on + strand, within AO353_00845at 192.590 kb on - strand, within AO353_00845at 192.590 kb on - strand, within AO353_00845at 192.590 kb on - strand, within AO353_00845at 192.590 kb on - strand, within AO353_00845at 192.590 kb on - strand, within AO353_00845at 192.590 kb on - strand, within AO353_00845at 192.673 kb on - strand, within AO353_00845at 192.673 kb on - strand, within AO353_00845at 192.673 kb on - strand, within AO353_00845at 192.866 kb on + strand, within AO353_00845at 192.867 kb on - strand, within AO353_00845at 192.867 kb on - strand, within AO353_00845at 192.984 kb on - strandat 193.069 kb on - strandat 193.122 kb on + strand, within AO353_00850at 193.122 kb on + strand, within AO353_00850at 193.123 kb on - strand, within AO353_00850at 193.123 kb on - strand, within AO353_00850at 193.123 kb on - strand, within AO353_00850at 193.128 kb on + strand, within AO353_00850at 193.128 kb on + strand, within AO353_00850at 193.129 kb on - strand, within AO353_00850at 193.129 kb on - strand, within AO353_00850at 193.129 kb on - strand, within AO353_00850at 193.129 kb on - strand, within AO353_00850at 193.278 kb on + strand, within AO353_00850at 193.278 kb on + strand, within AO353_00850at 193.278 kb on + strand, within AO353_00850at 193.279 kb on - strand, within AO353_00850at 193.279 kb on - strand, within AO353_00850at 193.282 kb on + strand, within AO353_00850at 193.543 kb on + strandat 193.543 kb on + strandat 193.544 kb on - strandat 193.544 kb on - strandat 193.548 kb on + strandat 193.548 kb on + strandat 193.548 kb on + strandat 193.548 kb on + strandat 193.548 kb on + strandat 193.549 kb on - strandat 193.549 kb on - strandat 193.549 kb on - strandat 193.549 kb on - strandat 193.549 kb on - strandat 193.572 kb on + strandat 193.573 kb on - strandat 193.631 kb on + strandat 193.631 kb on + strandat 193.632 kb on - strandat 193.674 kb on + strand, within AO353_00855at 193.674 kb on + strand, within AO353_00855at 193.674 kb on + strand, within AO353_00855at 193.674 kb on + strand, within AO353_00855at 193.675 kb on - strand, within AO353_00855at 193.675 kb on - strand, within AO353_00855at 193.675 kb on - strand, within AO353_00855at 193.675 kb on - strand, within AO353_00855at 193.690 kb on + strand, within AO353_00855at 193.690 kb on + strand, within AO353_00855at 193.690 kb on + strand, within AO353_00855at 193.690 kb on + strand, within AO353_00855at 193.691 kb on - strand, within AO353_00855at 193.715 kb on + strand, within AO353_00855at 193.771 kb on + strand, within AO353_00855at 193.772 kb on - strand, within AO353_00855at 193.772 kb on - strand, within AO353_00855at 193.772 kb on - strand, within AO353_00855at 193.826 kb on + strand, within AO353_00855at 193.826 kb on + strand, within AO353_00855at 193.827 kb on - strand, within AO353_00855at 193.827 kb on - strand, within AO353_00855at 193.827 kb on - strand, within AO353_00855at 193.942 kb on + strandat 193.942 kb on + strandat 193.942 kb on + strandat 193.942 kb on + strandat 193.942 kb on + strandat 193.942 kb on + strandat 193.942 kb on + strandat 193.942 kb on + strandat 193.943 kb on - strandat 193.943 kb on - strandat 193.943 kb on - strandat 193.943 kb on - strandat 193.943 kb on - strandat 193.943 kb on - strandat 193.943 kb on - strandat 193.943 kb on - strandat 193.943 kb on - strandat 193.943 kb on - strandat 193.943 kb on - strandat 193.943 kb on - strandat 193.990 kb on + strandat 193.990 kb on + strandat 194.040 kb on + strandat 194.041 kb on - strandat 194.371 kb on + strand, within AO353_00860at 194.372 kb on - strand, within AO353_00860at 194.509 kb on + strand, within AO353_00860at 194.509 kb on + strand, within AO353_00860at 194.510 kb on - strand, within AO353_00860at 194.510 kb on - strand, within AO353_00860at 194.510 kb on - strand, within AO353_00860at 194.510 kb on - strand, within AO353_00860

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.25 vol%
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192,162 + AO353_00845 0.12 -2.0
192,162 + AO353_00845 0.12 +0.4
192,163 - AO353_00845 0.12 -0.5
192,163 - AO353_00845 0.12 -0.5
192,163 - AO353_00845 0.12 +0.2
192,163 - AO353_00845 0.12 -0.7
192,163 - AO353_00845 0.12 -1.8
192,164 + AO353_00845 0.12 -0.0
192,226 + AO353_00845 0.18 -2.0
192,320 - AO353_00845 0.28 +0.2
192,353 - AO353_00845 0.31 +0.8
192,489 - AO353_00845 0.45 -0.2
192,489 - AO353_00845 0.45 -1.1
192,490 + AO353_00845 0.45 -1.8
192,491 - AO353_00845 0.45 -0.8
192,491 - AO353_00845 0.45 +1.5
192,566 + AO353_00845 0.52 -0.4
192,567 - AO353_00845 0.52 -0.2
192,567 - AO353_00845 0.52 +0.7
192,577 + AO353_00845 0.53 -2.0
192,578 - AO353_00845 0.54 +1.5
192,578 - AO353_00845 0.54 -0.2
192,578 - AO353_00845 0.54 -1.5
192,578 - AO353_00845 0.54 -0.8
192,587 + AO353_00845 0.54 -0.5
192,588 - AO353_00845 0.55 -2.2
192,589 + AO353_00845 0.55 -0.8
192,589 + AO353_00845 0.55 -1.6
192,589 + AO353_00845 0.55 +0.1
192,589 + AO353_00845 0.55 -0.8
192,589 + AO353_00845 0.55 +1.2
192,590 - AO353_00845 0.55 -0.8
192,590 - AO353_00845 0.55 +0.8
192,590 - AO353_00845 0.55 +0.8
192,590 - AO353_00845 0.55 +0.3
192,590 - AO353_00845 0.55 +0.8
192,590 - AO353_00845 0.55 -1.2
192,673 - AO353_00845 0.63 -1.2
192,673 - AO353_00845 0.63 -0.9
192,673 - AO353_00845 0.63 +0.4
192,866 + AO353_00845 0.82 -1.8
192,867 - AO353_00845 0.83 +0.4
192,867 - AO353_00845 0.83 +0.8
192,984 - +0.8
193,069 - -0.2
193,122 + AO353_00850 0.11 -1.8
193,122 + AO353_00850 0.11 -1.0
193,123 - AO353_00850 0.11 -0.4
193,123 - AO353_00850 0.11 +1.5
193,123 - AO353_00850 0.11 -2.8
193,128 + AO353_00850 0.12 -0.8
193,128 + AO353_00850 0.12 -1.3
193,129 - AO353_00850 0.13 -1.6
193,129 - AO353_00850 0.13 -0.8
193,129 - AO353_00850 0.13 +1.1
193,129 - AO353_00850 0.13 +1.8
193,278 + AO353_00850 0.43 -0.3
193,278 + AO353_00850 0.43 -0.8
193,278 + AO353_00850 0.43 -1.5
193,279 - AO353_00850 0.43 +0.2
193,279 - AO353_00850 0.43 -2.0
193,282 + AO353_00850 0.44 -1.0
193,543 + -0.2
193,543 + -2.6
193,544 - -1.5
193,544 - -0.6
193,548 + -0.8
193,548 + -1.5
193,548 + -0.0
193,548 + -0.8
193,548 + -0.5
193,549 - +0.3
193,549 - -0.4
193,549 - -0.2
193,549 - -1.8
193,549 - +0.2
193,572 + +0.8
193,573 - -1.7
193,631 + -1.2
193,631 + -2.0
193,632 - +2.1
193,674 + AO353_00855 0.10 -2.0
193,674 + AO353_00855 0.10 +0.4
193,674 + AO353_00855 0.10 -1.2
193,674 + AO353_00855 0.10 -2.0
193,675 - AO353_00855 0.11 -0.5
193,675 - AO353_00855 0.11 -0.1
193,675 - AO353_00855 0.11 +0.8
193,675 - AO353_00855 0.11 +0.1
193,690 + AO353_00855 0.16 -1.2
193,690 + AO353_00855 0.16 -0.7
193,690 + AO353_00855 0.16 -2.0
193,690 + AO353_00855 0.16 +1.7
193,691 - AO353_00855 0.16 +1.2
193,715 + AO353_00855 0.24 +1.2
193,771 + AO353_00855 0.43 -1.5
193,772 - AO353_00855 0.43 -0.2
193,772 - AO353_00855 0.43 -0.8
193,772 - AO353_00855 0.43 -1.2
193,826 + AO353_00855 0.61 -2.0
193,826 + AO353_00855 0.61 +0.8
193,827 - AO353_00855 0.61 -0.2
193,827 - AO353_00855 0.61 +0.1
193,827 - AO353_00855 0.61 +0.3
193,942 + +3.1
193,942 + -0.8
193,942 + +0.4
193,942 + -0.6
193,942 + -1.2
193,942 + -1.3
193,942 + -0.9
193,942 + +1.1
193,943 - -1.2
193,943 - +0.6
193,943 - +1.6
193,943 - +1.4
193,943 - -1.2
193,943 - +1.1
193,943 - -3.1
193,943 - -1.0
193,943 - -1.1
193,943 - -1.0
193,943 - +0.3
193,943 - +0.3
193,990 + -1.4
193,990 + -0.5
194,040 + +0.1
194,041 - +0.4
194,371 + AO353_00860 0.33 -0.5
194,372 - AO353_00860 0.33 -1.8
194,509 + AO353_00860 0.47 +1.8
194,509 + AO353_00860 0.47 -1.5
194,510 - AO353_00860 0.47 -0.6
194,510 - AO353_00860 0.47 -0.2
194,510 - AO353_00860 0.47 -0.2
194,510 - AO353_00860 0.47 +0.8

Or see this region's nucleotide sequence