Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3200

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3199 and DvMF_3200 are separated by 54 nucleotidesDvMF_3200 and DvMF_3201 are separated by 106 nucleotides DvMF_3199: DvMF_3199 - hypothetical protein (RefSeq), at 4,030,654 to 4,032,516 _3199 DvMF_3200: DvMF_3200 - ribosomal RNA methyltransferase RrmJ/FtsJ (RefSeq), at 4,032,571 to 4,033,176 _3200 DvMF_3201: DvMF_3201 - hypothetical protein (RefSeq), at 4,033,283 to 4,034,026 _3201 Position (kb) 4032 4033 4034Strain fitness (log2 ratio) -1 0 1at 4031.621 kb on + strand, within DvMF_3199at 4031.643 kb on - strand, within DvMF_3199at 4031.665 kb on + strand, within DvMF_3199at 4031.793 kb on + strand, within DvMF_3199at 4031.801 kb on - strand, within DvMF_3199at 4031.870 kb on + strand, within DvMF_3199at 4031.870 kb on + strand, within DvMF_3199at 4031.870 kb on + strand, within DvMF_3199at 4031.960 kb on + strand, within DvMF_3199at 4032.016 kb on + strand, within DvMF_3199at 4032.334 kb on - strandat 4032.511 kb on + strandat 4032.568 kb on - strandat 4032.570 kb on + strandat 4032.842 kb on + strand, within DvMF_3200at 4032.937 kb on + strand, within DvMF_3200at 4033.002 kb on + strand, within DvMF_3200at 4033.401 kb on - strand, within DvMF_3201at 4033.855 kb on + strand, within DvMF_3201at 4033.876 kb on + strand, within DvMF_3201at 4034.004 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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4,031,621 + DvMF_3199 0.52 -0.4
4,031,643 - DvMF_3199 0.53 -0.8
4,031,665 + DvMF_3199 0.54 -1.0
4,031,793 + DvMF_3199 0.61 -0.8
4,031,801 - DvMF_3199 0.62 -0.6
4,031,870 + DvMF_3199 0.65 +0.1
4,031,870 + DvMF_3199 0.65 -0.4
4,031,870 + DvMF_3199 0.65 -1.4
4,031,960 + DvMF_3199 0.70 -0.2
4,032,016 + DvMF_3199 0.73 +0.4
4,032,334 - -0.4
4,032,511 + -0.2
4,032,568 - -0.0
4,032,570 + -0.6
4,032,842 + DvMF_3200 0.45 +1.6
4,032,937 + DvMF_3200 0.60 +0.4
4,033,002 + DvMF_3200 0.71 -0.5
4,033,401 - DvMF_3201 0.16 -0.9
4,033,855 + DvMF_3201 0.77 -0.4
4,033,876 + DvMF_3201 0.80 +0.3
4,034,004 - -0.6

Or see this region's nucleotide sequence