Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3136

Experiment: Defined MoLS4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_3134 and DvMF_3135 are separated by 257 nucleotidesDvMF_3135 and DvMF_3136 overlap by 4 nucleotidesDvMF_3136 and DvMF_3137 are separated by 253 nucleotides DvMF_3134: DvMF_3134 - protein of unknown function DUF21 (RefSeq), at 3,953,875 to 3,954,912 _3134 DvMF_3135: DvMF_3135 - histidinol-phosphate phosphatase family protein (RefSeq), at 3,955,170 to 3,955,871 _3135 DvMF_3136: DvMF_3136 - lipopolysaccharide heptosyltransferase II (RefSeq), at 3,955,868 to 3,956,902 _3136 DvMF_3137: DvMF_3137 - ABC transporter related (RefSeq), at 3,957,156 to 3,957,989 _3137 Position (kb) 3955 3956 3957Strain fitness (log2 ratio) -1 0 1at 3954.913 kb on + strandat 3954.913 kb on + strandat 3954.913 kb on + strandat 3955.047 kb on - strandat 3955.118 kb on - strandat 3955.118 kb on - strandat 3957.020 kb on + strandat 3957.039 kb on - strandat 3957.171 kb on - strandat 3957.243 kb on - strand, within DvMF_3137at 3957.308 kb on + strand, within DvMF_3137at 3957.384 kb on + strand, within DvMF_3137at 3957.384 kb on + strand, within DvMF_3137at 3957.663 kb on + strand, within DvMF_3137at 3957.837 kb on + strand, within DvMF_3137

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
remove
3,954,913 + -0.6
3,954,913 + -0.4
3,954,913 + +0.6
3,955,047 - -1.0
3,955,118 - -0.4
3,955,118 - -0.7
3,957,020 + -0.7
3,957,039 - -1.1
3,957,171 - -1.1
3,957,243 - DvMF_3137 0.10 -1.2
3,957,308 + DvMF_3137 0.18 -0.7
3,957,384 + DvMF_3137 0.27 -1.2
3,957,384 + DvMF_3137 0.27 -0.4
3,957,663 + DvMF_3137 0.61 -1.5
3,957,837 + DvMF_3137 0.82 -0.8

Or see this region's nucleotide sequence