Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2985

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2984 and DvMF_2985 are separated by 101 nucleotidesDvMF_2985 and DvMF_2986 are separated by 310 nucleotides DvMF_2984: DvMF_2984 - hypothetical protein (RefSeq), at 3,756,741 to 3,759,431 _2984 DvMF_2985: DvMF_2985 - Radical SAM domain protein (RefSeq), at 3,759,533 to 3,761,848 _2985 DvMF_2986: DvMF_2986 - multi-sensor hybrid histidine kinase (RefSeq), at 3,762,159 to 3,765,845 _2986 Position (kb) 3759 3760 3761 3762Strain fitness (log2 ratio) -2 -1 0 1at 3758.601 kb on + strand, within DvMF_2984at 3759.065 kb on + strand, within DvMF_2984at 3759.073 kb on - strand, within DvMF_2984at 3759.549 kb on + strandat 3759.640 kb on - strandat 3759.744 kb on + strandat 3759.772 kb on - strand, within DvMF_2985at 3759.881 kb on - strand, within DvMF_2985at 3759.890 kb on + strand, within DvMF_2985at 3760.005 kb on - strand, within DvMF_2985at 3760.059 kb on - strand, within DvMF_2985at 3760.141 kb on - strand, within DvMF_2985at 3760.174 kb on - strand, within DvMF_2985at 3760.239 kb on + strand, within DvMF_2985at 3760.348 kb on + strand, within DvMF_2985at 3760.354 kb on + strand, within DvMF_2985at 3761.259 kb on + strand, within DvMF_2985at 3761.283 kb on + strand, within DvMF_2985at 3761.765 kb on + strandat 3761.774 kb on + strandat 3761.782 kb on - strandat 3762.123 kb on - strandat 3762.186 kb on + strandat 3762.194 kb on - strandat 3762.338 kb on + strandat 3762.348 kb on + strandat 3762.398 kb on - strandat 3762.398 kb on - strandat 3762.507 kb on - strandat 3762.682 kb on - strand, within DvMF_2986at 3762.719 kb on + strand, within DvMF_2986at 3762.719 kb on - strand, within DvMF_2986at 3762.777 kb on - strand, within DvMF_2986

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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3,758,601 + DvMF_2984 0.69 -1.0
3,759,065 + DvMF_2984 0.86 -0.3
3,759,073 - DvMF_2984 0.87 -1.1
3,759,549 + -0.7
3,759,640 - -0.4
3,759,744 + -0.8
3,759,772 - DvMF_2985 0.10 -0.4
3,759,881 - DvMF_2985 0.15 -0.2
3,759,890 + DvMF_2985 0.15 -0.7
3,760,005 - DvMF_2985 0.20 -0.3
3,760,059 - DvMF_2985 0.23 +0.3
3,760,141 - DvMF_2985 0.26 -0.4
3,760,174 - DvMF_2985 0.28 -0.7
3,760,239 + DvMF_2985 0.30 -0.5
3,760,348 + DvMF_2985 0.35 -0.5
3,760,354 + DvMF_2985 0.35 -0.4
3,761,259 + DvMF_2985 0.75 -0.5
3,761,283 + DvMF_2985 0.76 +0.1
3,761,765 + -0.6
3,761,774 + -0.8
3,761,782 - -0.5
3,762,123 - -0.6
3,762,186 + -0.4
3,762,194 - +0.1
3,762,338 + -1.8
3,762,348 + -0.6
3,762,398 - -0.6
3,762,398 - -0.3
3,762,507 - +0.7
3,762,682 - DvMF_2986 0.14 -0.0
3,762,719 + DvMF_2986 0.15 -0.0
3,762,719 - DvMF_2986 0.15 -0.4
3,762,777 - DvMF_2986 0.17 -0.8

Or see this region's nucleotide sequence