Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2978

Experiment: Defined MoLS4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2977 and DvMF_2978 are separated by 177 nucleotidesDvMF_2978 and DvMF_2979 are separated by 139 nucleotides DvMF_2977: DvMF_2977 - NADH:flavin oxidoreductase/NADH oxidase (RefSeq), at 3,751,742 to 3,752,860 _2977 DvMF_2978: DvMF_2978 - hypothetical protein (RefSeq), at 3,753,038 to 3,753,370 _2978 DvMF_2979: DvMF_2979 - NADPH-dependent FMN reductase (RefSeq), at 3,753,510 to 3,754,124 _2979 Position (kb) 3753 3754Strain fitness (log2 ratio) -2 -1 0 1at 3752.360 kb on - strand, within DvMF_2977at 3752.384 kb on - strand, within DvMF_2977at 3752.966 kb on - strandat 3752.996 kb on + strandat 3753.151 kb on - strand, within DvMF_2978at 3753.232 kb on + strand, within DvMF_2978at 3753.439 kb on - strandat 3753.443 kb on + strandat 3753.564 kb on - strandat 3753.579 kb on - strand, within DvMF_2979at 3753.701 kb on - strand, within DvMF_2979at 3754.127 kb on - strandat 3754.151 kb on - strandat 3754.289 kb on + strandat 3754.364 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
remove
3,752,360 - DvMF_2977 0.55 -1.0
3,752,384 - DvMF_2977 0.57 -0.5
3,752,966 - -0.9
3,752,996 + +0.1
3,753,151 - DvMF_2978 0.34 +1.3
3,753,232 + DvMF_2978 0.58 -0.5
3,753,439 - -0.4
3,753,443 + -0.3
3,753,564 - -0.4
3,753,579 - DvMF_2979 0.11 -0.3
3,753,701 - DvMF_2979 0.31 -0.5
3,754,127 - -2.0
3,754,151 - +0.4
3,754,289 + -0.1
3,754,364 - -1.1

Or see this region's nucleotide sequence