Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2944

Experiment: Defined MoLS4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2943 and DvMF_2944 are separated by 153 nucleotidesDvMF_2944 and DvMF_2945 are separated by 151 nucleotidesDvMF_2945 and DvMF_2946 are separated by 145 nucleotides DvMF_2943: DvMF_2943 - hypothetical protein (RefSeq), at 3,714,966 to 3,715,706 _2943 DvMF_2944: DvMF_2944 - hypothetical protein (RefSeq), at 3,715,860 to 3,716,942 _2944 DvMF_2945: DvMF_2945 - Cupin 2 conserved barrel domain protein (RefSeq), at 3,717,094 to 3,717,591 _2945 DvMF_2946: DvMF_2946 - hypothetical protein (RefSeq), at 3,717,737 to 3,718,792 _2946 Position (kb) 3715 3716 3717Strain fitness (log2 ratio) -1 0 1at 3715.009 kb on + strandat 3715.014 kb on + strandat 3715.226 kb on - strand, within DvMF_2943at 3715.258 kb on - strand, within DvMF_2943at 3715.260 kb on + strand, within DvMF_2943at 3715.268 kb on - strand, within DvMF_2943at 3715.268 kb on - strand, within DvMF_2943at 3715.853 kb on + strandat 3715.914 kb on - strandat 3715.945 kb on + strandat 3715.960 kb on + strandat 3715.974 kb on + strand, within DvMF_2944at 3716.300 kb on + strand, within DvMF_2944at 3716.528 kb on + strand, within DvMF_2944at 3716.617 kb on + strand, within DvMF_2944at 3716.618 kb on + strand, within DvMF_2944at 3716.618 kb on + strand, within DvMF_2944at 3716.675 kb on + strand, within DvMF_2944at 3716.745 kb on + strand, within DvMF_2944at 3716.824 kb on - strand, within DvMF_2944at 3716.839 kb on - strandat 3717.074 kb on - strandat 3717.106 kb on + strandat 3717.357 kb on + strand, within DvMF_2945at 3717.357 kb on + strand, within DvMF_2945at 3717.417 kb on - strand, within DvMF_2945at 3717.424 kb on + strand, within DvMF_2945at 3717.458 kb on + strand, within DvMF_2945at 3717.603 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
remove
3,715,009 + +0.3
3,715,014 + -0.8
3,715,226 - DvMF_2943 0.35 -0.1
3,715,258 - DvMF_2943 0.39 -0.2
3,715,260 + DvMF_2943 0.40 +0.2
3,715,268 - DvMF_2943 0.41 -0.9
3,715,268 - DvMF_2943 0.41 -0.1
3,715,853 + +0.1
3,715,914 - -0.3
3,715,945 + -0.6
3,715,960 + +0.4
3,715,974 + DvMF_2944 0.11 -0.5
3,716,300 + DvMF_2944 0.41 +0.2
3,716,528 + DvMF_2944 0.62 -0.5
3,716,617 + DvMF_2944 0.70 -0.5
3,716,618 + DvMF_2944 0.70 -0.5
3,716,618 + DvMF_2944 0.70 +0.4
3,716,675 + DvMF_2944 0.75 -0.4
3,716,745 + DvMF_2944 0.82 +0.3
3,716,824 - DvMF_2944 0.89 -1.1
3,716,839 - +0.9
3,717,074 - -0.5
3,717,106 + +0.4
3,717,357 + DvMF_2945 0.53 -0.7
3,717,357 + DvMF_2945 0.53 -0.8
3,717,417 - DvMF_2945 0.65 -0.2
3,717,424 + DvMF_2945 0.66 -0.6
3,717,458 + DvMF_2945 0.73 -0.7
3,717,603 + -0.4

Or see this region's nucleotide sequence