Experiment: Defined MoLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2903 and DvMF_2904 are separated by 196 nucleotides DvMF_2904 and DvMF_2905 overlap by 1 nucleotides
DvMF_2903: DvMF_2903 - Radical SAM domain protein (RefSeq), at 3,663,759 to 3,664,940
_2903
DvMF_2904: DvMF_2904 - protein of unknown function DUF490 (RefSeq), at 3,665,137 to 3,670,950
_2904
DvMF_2905: DvMF_2905 - surface antigen (D15) (RefSeq), at 3,670,950 to 3,673,319
_2905
Position (kb)
3665
3666
3667
3668
3669
3670
3671 Strain fitness (log2 ratio)
-2
-1
0
1 at 3665.252 kb on + strand at 3665.411 kb on - strand at 3665.450 kb on - strand at 3665.457 kb on + strand at 3665.457 kb on + strand at 3665.465 kb on - strand at 3665.575 kb on + strand at 3665.592 kb on + strand at 3665.866 kb on - strand, within DvMF_2904 at 3666.090 kb on + strand, within DvMF_2904 at 3666.120 kb on + strand, within DvMF_2904 at 3666.265 kb on + strand, within DvMF_2904 at 3666.312 kb on + strand, within DvMF_2904 at 3666.320 kb on - strand, within DvMF_2904 at 3666.382 kb on + strand, within DvMF_2904 at 3666.478 kb on - strand, within DvMF_2904 at 3666.700 kb on - strand, within DvMF_2904 at 3666.875 kb on + strand, within DvMF_2904 at 3667.015 kb on - strand, within DvMF_2904 at 3667.153 kb on + strand, within DvMF_2904 at 3667.318 kb on + strand, within DvMF_2904 at 3667.437 kb on - strand, within DvMF_2904 at 3667.442 kb on - strand, within DvMF_2904 at 3667.593 kb on + strand, within DvMF_2904 at 3667.624 kb on - strand, within DvMF_2904 at 3667.710 kb on + strand, within DvMF_2904 at 3667.718 kb on - strand, within DvMF_2904 at 3668.006 kb on + strand, within DvMF_2904 at 3668.024 kb on - strand, within DvMF_2904 at 3668.034 kb on + strand, within DvMF_2904 at 3668.049 kb on - strand, within DvMF_2904 at 3668.205 kb on + strand, within DvMF_2904 at 3668.213 kb on - strand, within DvMF_2904 at 3668.467 kb on - strand, within DvMF_2904 at 3668.630 kb on - strand, within DvMF_2904 at 3668.858 kb on + strand, within DvMF_2904 at 3668.866 kb on - strand, within DvMF_2904 at 3668.956 kb on - strand, within DvMF_2904 at 3669.023 kb on - strand, within DvMF_2904 at 3669.062 kb on + strand, within DvMF_2904 at 3669.124 kb on + strand, within DvMF_2904 at 3669.362 kb on - strand, within DvMF_2904 at 3669.364 kb on + strand, within DvMF_2904 at 3669.492 kb on + strand, within DvMF_2904 at 3669.515 kb on - strand, within DvMF_2904 at 3669.883 kb on + strand, within DvMF_2904 at 3670.079 kb on - strand, within DvMF_2904 at 3670.079 kb on - strand, within DvMF_2904 at 3670.172 kb on + strand, within DvMF_2904 at 3670.172 kb on + strand, within DvMF_2904 at 3670.172 kb on + strand, within DvMF_2904 at 3670.172 kb on + strand, within DvMF_2904 at 3670.180 kb on - strand, within DvMF_2904 at 3670.180 kb on - strand, within DvMF_2904 at 3670.220 kb on + strand, within DvMF_2904 at 3670.228 kb on + strand, within DvMF_2904 at 3670.228 kb on - strand, within DvMF_2904 at 3670.560 kb on + strand at 3670.569 kb on - strand at 3670.596 kb on + strand at 3670.635 kb on + strand at 3670.859 kb on + strand at 3671.032 kb on - strand at 3671.180 kb on + strand at 3671.180 kb on + strand at 3671.264 kb on + strand, within DvMF_2905 at 3671.704 kb on - strand, within DvMF_2905 at 3671.830 kb on - strand, within DvMF_2905
Per-strain Table
Position Strand Gene LocusTag Fraction Defined MoLS4 remove 3,665,252 + -0.5 3,665,411 - +0.0 3,665,450 - -1.1 3,665,457 + -0.7 3,665,457 + -0.7 3,665,465 - -0.8 3,665,575 + -0.5 3,665,592 + -0.3 3,665,866 - DvMF_2904 0.13 -1.0 3,666,090 + DvMF_2904 0.16 +0.2 3,666,120 + DvMF_2904 0.17 -1.1 3,666,265 + DvMF_2904 0.19 +0.6 3,666,312 + DvMF_2904 0.20 -0.2 3,666,320 - DvMF_2904 0.20 -0.6 3,666,382 + DvMF_2904 0.21 +0.2 3,666,478 - DvMF_2904 0.23 -0.3 3,666,700 - DvMF_2904 0.27 -0.7 3,666,875 + DvMF_2904 0.30 -0.8 3,667,015 - DvMF_2904 0.32 -0.7 3,667,153 + DvMF_2904 0.35 -0.3 3,667,318 + DvMF_2904 0.38 -0.5 3,667,437 - DvMF_2904 0.40 +0.1 3,667,442 - DvMF_2904 0.40 +0.5 3,667,593 + DvMF_2904 0.42 -0.3 3,667,624 - DvMF_2904 0.43 +0.2 3,667,710 + DvMF_2904 0.44 -0.3 3,667,718 - DvMF_2904 0.44 -1.0 3,668,006 + DvMF_2904 0.49 -0.8 3,668,024 - DvMF_2904 0.50 -0.5 3,668,034 + DvMF_2904 0.50 -0.1 3,668,049 - DvMF_2904 0.50 -0.6 3,668,205 + DvMF_2904 0.53 -0.8 3,668,213 - DvMF_2904 0.53 -0.5 3,668,467 - DvMF_2904 0.57 +0.6 3,668,630 - DvMF_2904 0.60 +0.0 3,668,858 + DvMF_2904 0.64 -0.1 3,668,866 - DvMF_2904 0.64 -1.9 3,668,956 - DvMF_2904 0.66 -1.2 3,669,023 - DvMF_2904 0.67 -1.0 3,669,062 + DvMF_2904 0.68 -0.4 3,669,124 + DvMF_2904 0.69 -0.5 3,669,362 - DvMF_2904 0.73 -0.8 3,669,364 + DvMF_2904 0.73 -0.7 3,669,492 + DvMF_2904 0.75 +0.2 3,669,515 - DvMF_2904 0.75 -0.4 3,669,883 + DvMF_2904 0.82 +0.9 3,670,079 - DvMF_2904 0.85 -0.6 3,670,079 - DvMF_2904 0.85 -0.3 3,670,172 + DvMF_2904 0.87 -1.2 3,670,172 + DvMF_2904 0.87 +0.1 3,670,172 + DvMF_2904 0.87 -0.3 3,670,172 + DvMF_2904 0.87 -0.5 3,670,180 - DvMF_2904 0.87 -0.6 3,670,180 - DvMF_2904 0.87 -0.5 3,670,220 + DvMF_2904 0.87 -0.4 3,670,228 + DvMF_2904 0.88 -0.6 3,670,228 - DvMF_2904 0.88 -0.5 3,670,560 + -0.6 3,670,569 - -0.3 3,670,596 + -1.8 3,670,635 + -0.7 3,670,859 + -0.3 3,671,032 - -0.6 3,671,180 + -0.5 3,671,180 + -0.4 3,671,264 + DvMF_2905 0.13 -0.4 3,671,704 - DvMF_2905 0.32 -1.1 3,671,830 - DvMF_2905 0.37 -0.9
Or see this region's nucleotide sequence