Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1934

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1933 and DvMF_1934 are separated by 153 nucleotidesDvMF_1934 and DvMF_1935 are separated by 413 nucleotides DvMF_1933: DvMF_1933 - PAS modulated sigma54 specific transcriptional regulator, Fis family (RefSeq), at 2,384,612 to 2,386,036 _1933 DvMF_1934: DvMF_1934 - sulfoacetaldehyde acetyltransferase (RefSeq), at 2,386,190 to 2,387,932 _1934 DvMF_1935: DvMF_1935 - hypothetical protein (RefSeq), at 2,388,346 to 2,388,756 _1935 Position (kb) 2386 2387 2388Strain fitness (log2 ratio) -1 0 1at 2385.597 kb on + strand, within DvMF_1933at 2385.662 kb on + strand, within DvMF_1933at 2385.670 kb on - strand, within DvMF_1933at 2385.809 kb on + strand, within DvMF_1933at 2385.927 kb on - strandat 2385.981 kb on - strandat 2386.043 kb on - strandat 2386.078 kb on + strandat 2386.312 kb on - strandat 2386.798 kb on - strand, within DvMF_1934at 2386.798 kb on - strand, within DvMF_1934at 2387.049 kb on - strand, within DvMF_1934at 2387.142 kb on - strand, within DvMF_1934at 2387.583 kb on - strand, within DvMF_1934at 2387.593 kb on + strand, within DvMF_1934at 2387.601 kb on - strand, within DvMF_1934at 2387.711 kb on + strand, within DvMF_1934at 2388.140 kb on + strandat 2388.318 kb on + strandat 2388.505 kb on + strand, within DvMF_1935at 2388.550 kb on + strand, within DvMF_1935at 2388.628 kb on + strand, within DvMF_1935at 2388.714 kb on + strand, within DvMF_1935at 2388.746 kb on - strandat 2388.759 kb on - strandat 2388.759 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,385,597 + DvMF_1933 0.69 -0.5
2,385,662 + DvMF_1933 0.74 -0.3
2,385,670 - DvMF_1933 0.74 -0.6
2,385,809 + DvMF_1933 0.84 -0.6
2,385,927 - -0.6
2,385,981 - -0.6
2,386,043 - -0.8
2,386,078 + -0.6
2,386,312 - -0.6
2,386,798 - DvMF_1934 0.35 -0.6
2,386,798 - DvMF_1934 0.35 -0.1
2,387,049 - DvMF_1934 0.49 -0.3
2,387,142 - DvMF_1934 0.55 -0.3
2,387,583 - DvMF_1934 0.80 -1.1
2,387,593 + DvMF_1934 0.80 +0.2
2,387,601 - DvMF_1934 0.81 +0.3
2,387,711 + DvMF_1934 0.87 +0.7
2,388,140 + -0.9
2,388,318 + -0.3
2,388,505 + DvMF_1935 0.39 -0.0
2,388,550 + DvMF_1935 0.50 -0.7
2,388,628 + DvMF_1935 0.69 -1.0
2,388,714 + DvMF_1935 0.90 -0.8
2,388,746 - -0.9
2,388,759 - -0.9
2,388,759 - -0.5

Or see this region's nucleotide sequence