Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0968

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0967 and DvMF_0968 are separated by 576 nucleotidesDvMF_0968 and rplM are separated by 506 nucleotidesrplM and rpsI are separated by 22 nucleotides DvMF_0967: DvMF_0967 - putative transcriptional regulator, XRE family (RefSeq), at 1,173,724 to 1,174,221 _0967 DvMF_0968: DvMF_0968 - hypothetical protein (RefSeq), at 1,174,798 to 1,176,069 _0968 DvMF_0969: rplM - 50S ribosomal protein L13 (RefSeq), at 1,176,576 to 1,177,010 rplM DvMF_0970: rpsI - 30S ribosomal protein S9 (RefSeq), at 1,177,033 to 1,177,425 rpsI Position (kb) 1174 1175 1176 1177Strain fitness (log2 ratio) -2 -1 0 1at 1174.067 kb on + strand, within DvMF_0967at 1174.557 kb on - strandat 1174.592 kb on - strandat 1174.654 kb on - strandat 1174.798 kb on - strandat 1174.984 kb on - strand, within DvMF_0968at 1175.148 kb on + strand, within DvMF_0968at 1175.170 kb on - strand, within DvMF_0968at 1175.272 kb on + strand, within DvMF_0968at 1175.280 kb on - strand, within DvMF_0968at 1175.381 kb on + strand, within DvMF_0968at 1175.572 kb on - strand, within DvMF_0968at 1175.657 kb on - strand, within DvMF_0968at 1175.811 kb on - strand, within DvMF_0968at 1175.958 kb on + strandat 1175.972 kb on + strandat 1176.193 kb on - strandat 1176.286 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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1,174,067 + DvMF_0967 0.69 -0.3
1,174,557 - -0.8
1,174,592 - +0.5
1,174,654 - -1.9
1,174,798 - -0.7
1,174,984 - DvMF_0968 0.15 -0.6
1,175,148 + DvMF_0968 0.28 +0.5
1,175,170 - DvMF_0968 0.29 -0.4
1,175,272 + DvMF_0968 0.37 -0.4
1,175,280 - DvMF_0968 0.38 +0.5
1,175,381 + DvMF_0968 0.46 -1.0
1,175,572 - DvMF_0968 0.61 -0.2
1,175,657 - DvMF_0968 0.68 -0.4
1,175,811 - DvMF_0968 0.80 +0.6
1,175,958 + -0.6
1,175,972 + -0.5
1,176,193 - -1.3
1,176,286 - +0.5

Or see this region's nucleotide sequence