Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0897

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0896 and DvMF_0897 are separated by 165 nucleotidesDvMF_0897 and DvMF_0898 are separated by 513 nucleotides DvMF_0896: DvMF_0896 - hypothetical protein (RefSeq), at 1,079,785 to 1,080,477 _0896 DvMF_0897: DvMF_0897 - apurinic endonuclease Apn1 (RefSeq), at 1,080,643 to 1,081,545 _0897 DvMF_0898: DvMF_0898 - pyridine nucleotide-disulphide oxidoreductase dimerisation region (RefSeq), at 1,082,059 to 1,083,585 _0898 Position (kb) 1080 1081 1082Strain fitness (log2 ratio) -1 0 1at 1079.725 kb on + strandat 1080.459 kb on + strandat 1080.464 kb on + strandat 1080.471 kb on + strandat 1080.595 kb on + strandat 1080.745 kb on - strand, within DvMF_0897at 1080.884 kb on - strand, within DvMF_0897at 1080.976 kb on + strand, within DvMF_0897at 1081.209 kb on - strand, within DvMF_0897at 1081.501 kb on - strandat 1081.778 kb on - strandat 1081.846 kb on + strandat 1082.181 kb on - strandat 1082.191 kb on - strandat 1082.267 kb on - strand, within DvMF_0898at 1082.320 kb on + strand, within DvMF_0898

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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1,079,725 + +0.1
1,080,459 + -0.6
1,080,464 + +0.1
1,080,471 + -0.4
1,080,595 + -0.6
1,080,745 - DvMF_0897 0.11 -0.4
1,080,884 - DvMF_0897 0.27 +0.1
1,080,976 + DvMF_0897 0.37 -0.8
1,081,209 - DvMF_0897 0.63 -1.2
1,081,501 - -0.5
1,081,778 - -0.2
1,081,846 + +0.4
1,082,181 - -0.3
1,082,191 - -0.1
1,082,267 - DvMF_0898 0.14 -0.6
1,082,320 + DvMF_0898 0.17 +0.1

Or see this region's nucleotide sequence