Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3368

Experiment: MoYLS4 with Zinc Sulfate 0.1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaspS and hisS are separated by 18 nucleotideshisS and DVU3369 are separated by 120 nucleotides DVU3367: aspS - aspartyl-tRNA synthetase (TIGR), at 3,537,577 to 3,539,409 aspS DVU3368: hisS - histidyl-tRNA synthetase (TIGR), at 3,539,428 to 3,540,681 hisS DVU3369: DVU3369 - conserved domain protein (TIGR), at 3,540,802 to 3,541,590 DVU3369 Position (kb) 3539 3540 3541Strain fitness (log2 ratio) -2 -1 0 1at 3540.820 kb on + strandat 3540.820 kb on + strandat 3540.820 kb on + strandat 3540.828 kb on - strandat 3540.894 kb on - strand, within DVU3369at 3540.899 kb on + strand, within DVU3369at 3540.933 kb on + strand, within DVU3369at 3540.941 kb on - strand, within DVU3369at 3541.007 kb on + strand, within DVU3369at 3541.090 kb on - strand, within DVU3369at 3541.240 kb on - strand, within DVU3369at 3541.267 kb on - strand, within DVU3369at 3541.267 kb on - strand, within DVU3369at 3541.280 kb on - strand, within DVU3369at 3541.304 kb on + strand, within DVU3369at 3541.317 kb on + strand, within DVU3369at 3541.331 kb on - strand, within DVU3369at 3541.543 kb on + strandat 3541.543 kb on + strandat 3541.582 kb on + strandat 3541.605 kb on - strandat 3541.630 kb on - strandat 3541.646 kb on + strandat 3541.658 kb on + strandat 3541.661 kb on - strandat 3541.668 kb on + strandat 3541.676 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 0.1mM
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3,540,820 + -0.5
3,540,820 + -1.3
3,540,820 + -0.5
3,540,828 - -0.3
3,540,894 - DVU3369 0.12 -0.2
3,540,899 + DVU3369 0.12 -2.6
3,540,933 + DVU3369 0.17 -1.6
3,540,941 - DVU3369 0.18 -0.8
3,541,007 + DVU3369 0.26 -2.3
3,541,090 - DVU3369 0.37 -1.1
3,541,240 - DVU3369 0.56 -1.3
3,541,267 - DVU3369 0.59 -2.0
3,541,267 - DVU3369 0.59 -0.4
3,541,280 - DVU3369 0.61 -0.9
3,541,304 + DVU3369 0.64 -1.8
3,541,317 + DVU3369 0.65 -1.3
3,541,331 - DVU3369 0.67 -1.0
3,541,543 + -1.7
3,541,543 + -2.2
3,541,582 + +0.5
3,541,605 - +0.2
3,541,630 - +0.2
3,541,646 + +0.7
3,541,658 + +0.3
3,541,661 - +0.3
3,541,668 + +0.0
3,541,676 - -1.0

Or see this region's nucleotide sequence