Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.951.1

Experiment: Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.950.1 and Xcc-8004.951.1 overlap by 4 nucleotidesXcc-8004.951.1 and Xcc-8004.952.1 overlap by 4 nucleotides Xcc-8004.950.1: Xcc-8004.950.1 - General secretion pathway protein L, at 893,769 to 894,833 Xcc-8004.950.1 Xcc-8004.951.1: Xcc-8004.951.1 - General secretion pathway protein M, at 894,830 to 895,282 Xcc-8004.951.1 Xcc-8004.952.1: Xcc-8004.952.1 - General secretion pathway protein N, at 895,279 to 895,995 Xcc-8004.952.1 Position (kb) 894 895 896Strain fitness (log2 ratio) -2 -1 0 1at 894.666 kb on + strand, within Xcc-8004.950.1at 894.667 kb on - strand, within Xcc-8004.950.1at 894.939 kb on - strand, within Xcc-8004.951.1at 894.939 kb on - strand, within Xcc-8004.951.1at 896.012 kb on + strandat 896.032 kb on - strandat 896.130 kb on + strandat 896.147 kb on + strandat 896.191 kb on - strandat 896.194 kb on + strandat 896.194 kb on + strandat 896.194 kb on + strandat 896.194 kb on + strandat 896.194 kb on + strandat 896.194 kb on + strandat 896.194 kb on + strandat 896.194 kb on + strandat 896.194 kb on + strandat 896.194 kb on + strandat 896.194 kb on + strandat 896.194 kb on + strandat 896.194 kb on + strandat 896.195 kb on - strandat 896.195 kb on - strandat 896.195 kb on - strandat 896.195 kb on - strandat 896.195 kb on - strandat 896.195 kb on - strandat 896.195 kb on - strandat 896.195 kb on - strandat 896.195 kb on - strandat 896.195 kb on - strandat 896.195 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
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894,666 + Xcc-8004.950.1 0.84 -1.6
894,667 - Xcc-8004.950.1 0.84 -2.1
894,939 - Xcc-8004.951.1 0.24 -0.2
894,939 - Xcc-8004.951.1 0.24 -1.1
896,012 + +0.9
896,032 - +0.1
896,130 + -0.1
896,147 + +0.4
896,191 - -0.4
896,194 + -0.4
896,194 + -1.2
896,194 + +0.3
896,194 + -0.4
896,194 + +0.9
896,194 + -0.6
896,194 + +0.7
896,194 + +0.7
896,194 + -0.9
896,194 + +0.7
896,194 + +0.2
896,194 + +0.6
896,194 + +0.5
896,195 - +0.2
896,195 - +1.2
896,195 - +0.2
896,195 - -1.9
896,195 - +0.2
896,195 - +0.7
896,195 - -0.2
896,195 - -0.4
896,195 - -0.0
896,195 - -0.8
896,195 - +0.2

Or see this region's nucleotide sequence