Experiment: Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.944.1 and Xcc-8004.945.1 are separated by 26 nucleotides Xcc-8004.945.1 and Xcc-8004.946.1 are separated by 9 nucleotides Xcc-8004.946.1 and Xcc-8004.947.1 overlap by 41 nucleotides Xcc-8004.947.1 and Xcc-8004.948.1 overlap by 1 nucleotides Xcc-8004.948.1 and Xcc-8004.949.1 overlap by 4 nucleotides
Xcc-8004.944.1: Xcc-8004.944.1 - General secretion pathway protein F, at 889,608 to 890,804
Xcc-8004.944.1
Xcc-8004.945.1: Xcc-8004.945.1 - General secretion pathway protein G, at 890,831 to 891,295
Xcc-8004.945.1
Xcc-8004.946.1: Xcc-8004.946.1 - General secretion pathway protein H, at 891,305 to 891,829
Xcc-8004.946.1
Xcc-8004.947.1: Xcc-8004.947.1 - General secretion pathway protein I, at 891,789 to 892,184
Xcc-8004.947.1
Xcc-8004.948.1: Xcc-8004.948.1 - General secretion pathway protein J, at 892,184 to 892,783
Xcc-8004.948.1
Xcc-8004.949.1: Xcc-8004.949.1 - General secretion pathway protein K, at 892,780 to 893,772
Xcc-8004.949.1
Position (kb) 891
892
893 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 891.063 kb on - strand, within Xcc-8004.945.1 at 891.146 kb on + strand, within Xcc-8004.945.1 at 891.146 kb on + strand, within Xcc-8004.945.1 at 891.146 kb on + strand, within Xcc-8004.945.1 at 891.146 kb on + strand, within Xcc-8004.945.1 at 891.227 kb on + strand, within Xcc-8004.945.1 at 891.227 kb on + strand, within Xcc-8004.945.1 at 891.228 kb on - strand, within Xcc-8004.945.1 at 891.228 kb on - strand, within Xcc-8004.945.1 at 891.411 kb on + strand, within Xcc-8004.946.1 at 891.587 kb on + strand, within Xcc-8004.946.1 at 891.587 kb on + strand, within Xcc-8004.946.1 at 891.643 kb on + strand, within Xcc-8004.946.1 at 892.175 kb on + strand at 892.360 kb on - strand, within Xcc-8004.948.1 at 892.360 kb on - strand, within Xcc-8004.948.1 at 892.942 kb on + strand, within Xcc-8004.949.1 at 892.943 kb on - strand, within Xcc-8004.949.1 at 893.173 kb on + strand, within Xcc-8004.949.1 at 893.173 kb on + strand, within Xcc-8004.949.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x remove 891,063 - Xcc-8004.945.1 0.50 -0.2 891,146 + Xcc-8004.945.1 0.68 -0.1 891,146 + Xcc-8004.945.1 0.68 -3.4 891,146 + Xcc-8004.945.1 0.68 -0.1 891,146 + Xcc-8004.945.1 0.68 -0.7 891,227 + Xcc-8004.945.1 0.85 +2.1 891,227 + Xcc-8004.945.1 0.85 +2.4 891,228 - Xcc-8004.945.1 0.85 -0.9 891,228 - Xcc-8004.945.1 0.85 -0.4 891,411 + Xcc-8004.946.1 0.20 -0.1 891,587 + Xcc-8004.946.1 0.54 +1.4 891,587 + Xcc-8004.946.1 0.54 -0.1 891,643 + Xcc-8004.946.1 0.64 +0.5 892,175 + -0.9 892,360 - Xcc-8004.948.1 0.29 -0.1 892,360 - Xcc-8004.948.1 0.29 +0.9 892,942 + Xcc-8004.949.1 0.16 +0.4 892,943 - Xcc-8004.949.1 0.16 +0.5 893,173 + Xcc-8004.949.1 0.40 +0.7 893,173 + Xcc-8004.949.1 0.40 -0.1
Or see this region's nucleotide sequence