Experiment: Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.762.1 and Xcc-8004.764.1 are separated by 163 nucleotides Xcc-8004.764.1 and Xcc-8004.765.1 are separated by 141 nucleotides Xcc-8004.765.1 and Xcc-8004.767.1 are separated by 163 nucleotides
Xcc-8004.762.1: Xcc-8004.762.1 - FIG01210947: hypothetical protein, at 710,165 to 710,719
Xcc-8004.762.1
Xcc-8004.764.1: Xcc-8004.764.1 - FIG01213873: hypothetical protein, at 710,883 to 711,296
Xcc-8004.764.1
Xcc-8004.765.1: Xcc-8004.765.1 - L-fuco-beta-pyranose dehydrogenase (EC 1.1.1.122), at 711,438 to 713,024
Xcc-8004.765.1
Xcc-8004.767.1: Xcc-8004.767.1 - FIG01210758: hypothetical protein, at 713,188 to 714,579
Xcc-8004.767.1
Position (kb) 711
712
713
714 Strain fitness (log2 ratio) -1
0
1
2 at 710.465 kb on + strand, within Xcc-8004.762.1 at 710.495 kb on + strand, within Xcc-8004.762.1 at 710.496 kb on - strand, within Xcc-8004.762.1 at 710.591 kb on + strand, within Xcc-8004.762.1 at 710.592 kb on - strand, within Xcc-8004.762.1 at 710.592 kb on - strand, within Xcc-8004.762.1 at 710.595 kb on - strand, within Xcc-8004.762.1 at 710.682 kb on + strand at 710.683 kb on - strand at 710.683 kb on - strand at 710.683 kb on - strand at 710.703 kb on - strand at 710.718 kb on - strand at 710.764 kb on + strand at 710.765 kb on - strand at 710.770 kb on + strand at 710.770 kb on + strand at 710.770 kb on + strand at 710.771 kb on - strand at 710.772 kb on + strand at 710.773 kb on - strand at 710.837 kb on + strand at 710.837 kb on + strand at 710.837 kb on + strand at 710.837 kb on + strand at 710.939 kb on + strand, within Xcc-8004.764.1 at 710.940 kb on - strand, within Xcc-8004.764.1 at 710.940 kb on - strand, within Xcc-8004.764.1 at 711.306 kb on + strand at 711.356 kb on + strand at 711.356 kb on + strand at 711.356 kb on + strand at 712.135 kb on + strand, within Xcc-8004.765.1 at 712.136 kb on - strand, within Xcc-8004.765.1 at 712.210 kb on + strand, within Xcc-8004.765.1 at 712.210 kb on + strand, within Xcc-8004.765.1 at 712.384 kb on + strand, within Xcc-8004.765.1 at 712.576 kb on + strand, within Xcc-8004.765.1 at 712.596 kb on - strand, within Xcc-8004.765.1 at 712.615 kb on + strand, within Xcc-8004.765.1 at 712.615 kb on + strand, within Xcc-8004.765.1 at 712.616 kb on - strand, within Xcc-8004.765.1 at 712.616 kb on - strand, within Xcc-8004.765.1 at 712.616 kb on - strand, within Xcc-8004.765.1 at 712.715 kb on - strand, within Xcc-8004.765.1 at 712.715 kb on - strand, within Xcc-8004.765.1 at 712.861 kb on + strand, within Xcc-8004.765.1 at 712.861 kb on + strand, within Xcc-8004.765.1 at 712.862 kb on - strand, within Xcc-8004.765.1 at 712.862 kb on - strand, within Xcc-8004.765.1 at 713.018 kb on + strand at 713.018 kb on + strand at 713.018 kb on + strand at 713.019 kb on - strand at 713.145 kb on - strand at 713.343 kb on - strand, within Xcc-8004.767.1 at 713.343 kb on - strand, within Xcc-8004.767.1 at 713.451 kb on - strand, within Xcc-8004.767.1 at 713.451 kb on - strand, within Xcc-8004.767.1 at 713.451 kb on - strand, within Xcc-8004.767.1 at 713.533 kb on + strand, within Xcc-8004.767.1 at 713.624 kb on + strand, within Xcc-8004.767.1 at 713.624 kb on + strand, within Xcc-8004.767.1 at 713.624 kb on + strand, within Xcc-8004.767.1 at 713.624 kb on + strand, within Xcc-8004.767.1 at 713.624 kb on + strand, within Xcc-8004.767.1 at 713.624 kb on + strand, within Xcc-8004.767.1 at 713.625 kb on - strand, within Xcc-8004.767.1 at 713.625 kb on - strand, within Xcc-8004.767.1 at 713.625 kb on - strand, within Xcc-8004.767.1 at 713.625 kb on - strand, within Xcc-8004.767.1 at 713.625 kb on - strand, within Xcc-8004.767.1 at 713.625 kb on - strand, within Xcc-8004.767.1 at 713.625 kb on - strand, within Xcc-8004.767.1 at 713.635 kb on + strand, within Xcc-8004.767.1 at 713.635 kb on + strand, within Xcc-8004.767.1 at 713.635 kb on + strand, within Xcc-8004.767.1 at 713.635 kb on + strand, within Xcc-8004.767.1 at 713.635 kb on + strand, within Xcc-8004.767.1 at 713.636 kb on - strand, within Xcc-8004.767.1 at 713.636 kb on - strand, within Xcc-8004.767.1 at 713.636 kb on - strand, within Xcc-8004.767.1 at 713.652 kb on + strand, within Xcc-8004.767.1 at 713.858 kb on + strand, within Xcc-8004.767.1 at 713.858 kb on + strand, within Xcc-8004.767.1 at 713.858 kb on + strand, within Xcc-8004.767.1 at 713.858 kb on + strand, within Xcc-8004.767.1 at 713.859 kb on - strand, within Xcc-8004.767.1 at 713.912 kb on - strand, within Xcc-8004.767.1 at 713.912 kb on - strand, within Xcc-8004.767.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x remove 710,465 + Xcc-8004.762.1 0.54 +0.0 710,495 + Xcc-8004.762.1 0.59 +0.0 710,496 - Xcc-8004.762.1 0.60 +0.2 710,591 + Xcc-8004.762.1 0.77 -0.2 710,592 - Xcc-8004.762.1 0.77 +0.1 710,592 - Xcc-8004.762.1 0.77 +1.5 710,595 - Xcc-8004.762.1 0.77 -0.8 710,682 + +0.9 710,683 - +0.9 710,683 - -1.0 710,683 - -0.0 710,703 - -0.7 710,718 - +0.5 710,764 + +0.9 710,765 - -0.1 710,770 + -1.1 710,770 + -0.1 710,770 + -1.1 710,771 - +0.3 710,772 + +1.2 710,773 - -0.9 710,837 + -0.3 710,837 + -0.3 710,837 + +1.2 710,837 + +2.4 710,939 + Xcc-8004.764.1 0.14 +0.2 710,940 - Xcc-8004.764.1 0.14 +0.5 710,940 - Xcc-8004.764.1 0.14 -0.4 711,306 + -1.4 711,356 + +1.4 711,356 + +0.6 711,356 + +1.1 712,135 + Xcc-8004.765.1 0.44 -0.9 712,136 - Xcc-8004.765.1 0.44 -0.5 712,210 + Xcc-8004.765.1 0.49 -0.0 712,210 + Xcc-8004.765.1 0.49 -1.7 712,384 + Xcc-8004.765.1 0.60 -0.4 712,576 + Xcc-8004.765.1 0.72 -0.1 712,596 - Xcc-8004.765.1 0.73 +0.9 712,615 + Xcc-8004.765.1 0.74 -1.2 712,615 + Xcc-8004.765.1 0.74 +0.2 712,616 - Xcc-8004.765.1 0.74 +0.9 712,616 - Xcc-8004.765.1 0.74 -1.2 712,616 - Xcc-8004.765.1 0.74 +0.0 712,715 - Xcc-8004.765.1 0.80 +0.1 712,715 - Xcc-8004.765.1 0.80 +0.9 712,861 + Xcc-8004.765.1 0.90 -0.1 712,861 + Xcc-8004.765.1 0.90 -0.5 712,862 - Xcc-8004.765.1 0.90 -1.5 712,862 - Xcc-8004.765.1 0.90 -0.4 713,018 + +0.1 713,018 + -1.1 713,018 + -0.6 713,019 - -0.4 713,145 - -0.1 713,343 - Xcc-8004.767.1 0.11 +1.5 713,343 - Xcc-8004.767.1 0.11 -0.7 713,451 - Xcc-8004.767.1 0.19 -1.3 713,451 - Xcc-8004.767.1 0.19 +1.3 713,451 - Xcc-8004.767.1 0.19 -0.7 713,533 + Xcc-8004.767.1 0.25 +0.9 713,624 + Xcc-8004.767.1 0.31 +0.1 713,624 + Xcc-8004.767.1 0.31 +1.0 713,624 + Xcc-8004.767.1 0.31 +0.3 713,624 + Xcc-8004.767.1 0.31 -1.7 713,624 + Xcc-8004.767.1 0.31 -0.1 713,624 + Xcc-8004.767.1 0.31 -0.4 713,625 - Xcc-8004.767.1 0.31 -0.4 713,625 - Xcc-8004.767.1 0.31 -0.3 713,625 - Xcc-8004.767.1 0.31 -0.2 713,625 - Xcc-8004.767.1 0.31 +0.9 713,625 - Xcc-8004.767.1 0.31 -1.1 713,625 - Xcc-8004.767.1 0.31 -1.4 713,625 - Xcc-8004.767.1 0.31 -1.4 713,635 + Xcc-8004.767.1 0.32 -0.1 713,635 + Xcc-8004.767.1 0.32 +1.1 713,635 + Xcc-8004.767.1 0.32 -0.7 713,635 + Xcc-8004.767.1 0.32 +0.3 713,635 + Xcc-8004.767.1 0.32 +1.5 713,636 - Xcc-8004.767.1 0.32 +0.6 713,636 - Xcc-8004.767.1 0.32 +0.6 713,636 - Xcc-8004.767.1 0.32 -0.9 713,652 + Xcc-8004.767.1 0.33 -0.3 713,858 + Xcc-8004.767.1 0.48 +0.5 713,858 + Xcc-8004.767.1 0.48 +1.4 713,858 + Xcc-8004.767.1 0.48 +1.1 713,858 + Xcc-8004.767.1 0.48 -0.4 713,859 - Xcc-8004.767.1 0.48 +0.3 713,912 - Xcc-8004.767.1 0.52 +0.2 713,912 - Xcc-8004.767.1 0.52 -0.9
Or see this region's nucleotide sequence