Experiment: Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.738.1 and Xcc-8004.739.1 are separated by 2 nucleotides Xcc-8004.739.1 and Xcc-8004.740.1 overlap by 4 nucleotides Xcc-8004.740.1 and Xcc-8004.741.1 are separated by 2 nucleotides Xcc-8004.741.1 and Xcc-8004.742.1 overlap by 4 nucleotides
Xcc-8004.738.1: Xcc-8004.738.1 - Malonate decarboxylase gamma subunit, at 687,410 to 688,114
Xcc-8004.738.1
Xcc-8004.739.1: Xcc-8004.739.1 - Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-), at 688,117 to 688,758
Xcc-8004.739.1
Xcc-8004.740.1: Xcc-8004.740.1 - Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25), at 688,755 to 689,921
Xcc-8004.740.1
Xcc-8004.741.1: Xcc-8004.741.1 - hypothetical protein, at 689,924 to 690,088
Xcc-8004.741.1
Xcc-8004.742.1: Xcc-8004.742.1 - Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39), at 690,085 to 691,005
Xcc-8004.742.1
Position (kb) 688
689
690 Strain fitness (log2 ratio) -2
-1
0
1 at 687.942 kb on - strand, within Xcc-8004.738.1 at 687.950 kb on - strand, within Xcc-8004.738.1 at 688.501 kb on + strand, within Xcc-8004.739.1 at 688.501 kb on + strand, within Xcc-8004.739.1 at 688.501 kb on + strand, within Xcc-8004.739.1 at 688.502 kb on - strand, within Xcc-8004.739.1 at 688.502 kb on - strand, within Xcc-8004.739.1 at 688.664 kb on - strand, within Xcc-8004.739.1 at 688.760 kb on + strand at 688.933 kb on + strand, within Xcc-8004.740.1 at 688.934 kb on - strand, within Xcc-8004.740.1 at 688.962 kb on - strand, within Xcc-8004.740.1 at 689.048 kb on + strand, within Xcc-8004.740.1 at 689.602 kb on + strand, within Xcc-8004.740.1 at 689.702 kb on - strand, within Xcc-8004.740.1 at 689.920 kb on - strand at 689.920 kb on - strand at 690.002 kb on + strand, within Xcc-8004.741.1 at 690.003 kb on - strand, within Xcc-8004.741.1 at 690.003 kb on - strand, within Xcc-8004.741.1 at 690.003 kb on - strand, within Xcc-8004.741.1 at 690.391 kb on - strand, within Xcc-8004.742.1 at 690.525 kb on - strand, within Xcc-8004.742.1 at 690.525 kb on - strand, within Xcc-8004.742.1 at 690.651 kb on + strand, within Xcc-8004.742.1 at 690.651 kb on + strand, within Xcc-8004.742.1 at 690.762 kb on + strand, within Xcc-8004.742.1 at 690.763 kb on - strand, within Xcc-8004.742.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x remove 687,942 - Xcc-8004.738.1 0.75 +1.0 687,950 - Xcc-8004.738.1 0.77 +0.3 688,501 + Xcc-8004.739.1 0.60 +0.4 688,501 + Xcc-8004.739.1 0.60 +1.0 688,501 + Xcc-8004.739.1 0.60 -0.7 688,502 - Xcc-8004.739.1 0.60 +0.2 688,502 - Xcc-8004.739.1 0.60 -1.8 688,664 - Xcc-8004.739.1 0.85 +0.2 688,760 + +0.0 688,933 + Xcc-8004.740.1 0.15 -0.3 688,934 - Xcc-8004.740.1 0.15 -0.5 688,962 - Xcc-8004.740.1 0.18 -1.6 689,048 + Xcc-8004.740.1 0.25 -0.7 689,602 + Xcc-8004.740.1 0.73 -1.0 689,702 - Xcc-8004.740.1 0.81 +0.6 689,920 - -0.7 689,920 - -0.3 690,002 + Xcc-8004.741.1 0.47 +0.2 690,003 - Xcc-8004.741.1 0.48 -1.6 690,003 - Xcc-8004.741.1 0.48 -0.5 690,003 - Xcc-8004.741.1 0.48 -0.1 690,391 - Xcc-8004.742.1 0.33 +0.6 690,525 - Xcc-8004.742.1 0.48 -0.4 690,525 - Xcc-8004.742.1 0.48 -0.7 690,651 + Xcc-8004.742.1 0.61 +0.2 690,651 + Xcc-8004.742.1 0.61 -1.1 690,762 + Xcc-8004.742.1 0.74 -0.7 690,763 - Xcc-8004.742.1 0.74 +0.4
Or see this region's nucleotide sequence