Experiment: Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.734.1 and Xcc-8004.735.1 are separated by 9 nucleotides Xcc-8004.735.1 and Xcc-8004.736.1 overlap by 4 nucleotides Xcc-8004.736.1 and Xcc-8004.737.1 overlap by 4 nucleotides Xcc-8004.737.1 and Xcc-8004.738.1 overlap by 4 nucleotides
Xcc-8004.734.1: Xcc-8004.734.1 - Malonate decarboxylase alpha subunit, at 684,104 to 685,750
Xcc-8004.734.1
Xcc-8004.735.1: Xcc-8004.735.1 - Malonate decarboxylase delta subunit, at 685,760 to 686,077
Xcc-8004.735.1
Xcc-8004.736.1: Xcc-8004.736.1 - hypothetical protein, at 686,074 to 686,502
Xcc-8004.736.1
Xcc-8004.737.1: Xcc-8004.737.1 - Malonate decarboxylase beta subunit, at 686,499 to 687,413
Xcc-8004.737.1
Xcc-8004.738.1: Xcc-8004.738.1 - Malonate decarboxylase gamma subunit, at 687,410 to 688,114
Xcc-8004.738.1
Position (kb) 686
687 Strain fitness (log2 ratio) -2
-1
0
1
2 at 685.125 kb on + strand, within Xcc-8004.734.1 at 685.126 kb on - strand, within Xcc-8004.734.1 at 685.126 kb on - strand, within Xcc-8004.734.1 at 685.126 kb on - strand, within Xcc-8004.734.1 at 685.126 kb on - strand, within Xcc-8004.734.1 at 685.126 kb on - strand, within Xcc-8004.734.1 at 685.127 kb on + strand, within Xcc-8004.734.1 at 685.127 kb on + strand, within Xcc-8004.734.1 at 685.127 kb on + strand, within Xcc-8004.734.1 at 685.128 kb on - strand, within Xcc-8004.734.1 at 685.128 kb on - strand, within Xcc-8004.734.1 at 685.128 kb on - strand, within Xcc-8004.734.1 at 685.449 kb on - strand, within Xcc-8004.734.1 at 685.449 kb on - strand, within Xcc-8004.734.1 at 685.718 kb on + strand at 685.718 kb on + strand at 685.718 kb on + strand at 685.748 kb on + strand at 685.749 kb on - strand at 685.749 kb on - strand at 685.754 kb on + strand at 685.755 kb on - strand at 685.755 kb on - strand at 686.111 kb on + strand at 686.112 kb on - strand at 686.112 kb on - strand at 686.210 kb on + strand, within Xcc-8004.736.1 at 686.275 kb on - strand, within Xcc-8004.736.1 at 686.310 kb on - strand, within Xcc-8004.736.1 at 686.408 kb on + strand, within Xcc-8004.736.1 at 686.409 kb on - strand, within Xcc-8004.736.1 at 686.409 kb on - strand, within Xcc-8004.736.1 at 686.436 kb on + strand, within Xcc-8004.736.1 at 686.437 kb on - strand, within Xcc-8004.736.1 at 686.533 kb on - strand at 686.535 kb on + strand at 686.535 kb on + strand at 686.535 kb on + strand at 687.133 kb on - strand, within Xcc-8004.737.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x remove 685,125 + Xcc-8004.734.1 0.62 +0.5 685,126 - Xcc-8004.734.1 0.62 +0.4 685,126 - Xcc-8004.734.1 0.62 +0.4 685,126 - Xcc-8004.734.1 0.62 +0.6 685,126 - Xcc-8004.734.1 0.62 +0.0 685,126 - Xcc-8004.734.1 0.62 -0.4 685,127 + Xcc-8004.734.1 0.62 +1.1 685,127 + Xcc-8004.734.1 0.62 -0.6 685,127 + Xcc-8004.734.1 0.62 -0.7 685,128 - Xcc-8004.734.1 0.62 -0.7 685,128 - Xcc-8004.734.1 0.62 +0.3 685,128 - Xcc-8004.734.1 0.62 -1.9 685,449 - Xcc-8004.734.1 0.82 +1.9 685,449 - Xcc-8004.734.1 0.82 -0.4 685,718 + -0.4 685,718 + +0.4 685,718 + +0.1 685,748 + -0.7 685,749 - -0.1 685,749 - +0.9 685,754 + +1.8 685,755 - +0.0 685,755 - +1.2 686,111 + -0.0 686,112 - -0.4 686,112 - -1.5 686,210 + Xcc-8004.736.1 0.32 -1.4 686,275 - Xcc-8004.736.1 0.47 -1.2 686,310 - Xcc-8004.736.1 0.55 -0.7 686,408 + Xcc-8004.736.1 0.78 -0.9 686,409 - Xcc-8004.736.1 0.78 -0.5 686,409 - Xcc-8004.736.1 0.78 +0.7 686,436 + Xcc-8004.736.1 0.84 -0.1 686,437 - Xcc-8004.736.1 0.85 -0.5 686,533 - -0.1 686,535 + -0.5 686,535 + +0.3 686,535 + -0.1 687,133 - Xcc-8004.737.1 0.69 +0.2
Or see this region's nucleotide sequence