Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.718.1

Experiment: Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.716.1 and Xcc-8004.718.1 are separated by 109 nucleotidesXcc-8004.718.1 and Xcc-8004.719.1 are separated by 43 nucleotides Xcc-8004.716.1: Xcc-8004.716.1 - Fe2+-dicitrate sensor, membrane component, at 665,767 to 666,792 Xcc-8004.716.1 Xcc-8004.718.1: Xcc-8004.718.1 - hypothetical protein, at 666,902 to 667,282 Xcc-8004.718.1 Xcc-8004.719.1: Xcc-8004.719.1 - Ferric-pseudobactin M114 receptor pbuA precursor, at 667,326 to 669,854 Xcc-8004.719.1 Position (kb) 666 667 668Strain fitness (log2 ratio) -2 -1 0 1 2 3at 666.154 kb on + strand, within Xcc-8004.716.1at 666.155 kb on - strand, within Xcc-8004.716.1at 666.155 kb on - strand, within Xcc-8004.716.1at 666.155 kb on - strand, within Xcc-8004.716.1at 666.155 kb on - strand, within Xcc-8004.716.1at 666.392 kb on + strand, within Xcc-8004.716.1at 666.392 kb on + strand, within Xcc-8004.716.1at 666.393 kb on - strand, within Xcc-8004.716.1at 666.747 kb on - strandat 666.814 kb on + strandat 666.814 kb on + strandat 666.814 kb on + strandat 666.815 kb on - strandat 666.815 kb on - strandat 666.839 kb on - strandat 666.850 kb on + strandat 666.851 kb on - strandat 666.910 kb on + strandat 666.969 kb on + strand, within Xcc-8004.718.1at 667.512 kb on + strandat 667.512 kb on + strandat 667.513 kb on - strandat 667.513 kb on - strandat 667.635 kb on + strand, within Xcc-8004.719.1at 667.635 kb on + strand, within Xcc-8004.719.1at 667.635 kb on + strand, within Xcc-8004.719.1at 667.636 kb on - strand, within Xcc-8004.719.1at 667.636 kb on - strand, within Xcc-8004.719.1at 667.710 kb on + strand, within Xcc-8004.719.1at 667.711 kb on - strand, within Xcc-8004.719.1at 667.711 kb on - strand, within Xcc-8004.719.1at 667.714 kb on + strand, within Xcc-8004.719.1at 667.714 kb on + strand, within Xcc-8004.719.1at 667.714 kb on + strand, within Xcc-8004.719.1at 667.714 kb on + strand, within Xcc-8004.719.1at 667.715 kb on - strand, within Xcc-8004.719.1at 667.715 kb on - strand, within Xcc-8004.719.1at 667.715 kb on - strand, within Xcc-8004.719.1at 667.715 kb on - strand, within Xcc-8004.719.1at 667.715 kb on - strand, within Xcc-8004.719.1at 667.715 kb on - strand, within Xcc-8004.719.1at 667.715 kb on - strand, within Xcc-8004.719.1at 667.715 kb on - strand, within Xcc-8004.719.1at 667.833 kb on + strand, within Xcc-8004.719.1at 667.833 kb on + strand, within Xcc-8004.719.1at 667.833 kb on + strand, within Xcc-8004.719.1at 667.833 kb on + strand, within Xcc-8004.719.1at 667.834 kb on - strand, within Xcc-8004.719.1at 667.834 kb on - strand, within Xcc-8004.719.1at 667.834 kb on - strand, within Xcc-8004.719.1at 667.834 kb on - strand, within Xcc-8004.719.1at 667.834 kb on - strand, within Xcc-8004.719.1at 667.835 kb on + strand, within Xcc-8004.719.1at 668.007 kb on + strand, within Xcc-8004.719.1at 668.007 kb on + strand, within Xcc-8004.719.1at 668.007 kb on + strand, within Xcc-8004.719.1at 668.007 kb on + strand, within Xcc-8004.719.1at 668.007 kb on + strand, within Xcc-8004.719.1at 668.007 kb on + strand, within Xcc-8004.719.1at 668.007 kb on + strand, within Xcc-8004.719.1at 668.007 kb on + strand, within Xcc-8004.719.1at 668.008 kb on - strand, within Xcc-8004.719.1at 668.008 kb on - strand, within Xcc-8004.719.1at 668.008 kb on - strand, within Xcc-8004.719.1at 668.008 kb on - strand, within Xcc-8004.719.1at 668.008 kb on - strand, within Xcc-8004.719.1at 668.008 kb on - strand, within Xcc-8004.719.1at 668.008 kb on - strand, within Xcc-8004.719.1at 668.013 kb on + strand, within Xcc-8004.719.1at 668.013 kb on + strand, within Xcc-8004.719.1at 668.013 kb on + strand, within Xcc-8004.719.1at 668.013 kb on + strand, within Xcc-8004.719.1at 668.013 kb on + strand, within Xcc-8004.719.1at 668.013 kb on + strand, within Xcc-8004.719.1at 668.013 kb on + strand, within Xcc-8004.719.1at 668.013 kb on + strand, within Xcc-8004.719.1at 668.013 kb on + strand, within Xcc-8004.719.1at 668.014 kb on - strand, within Xcc-8004.719.1at 668.014 kb on - strand, within Xcc-8004.719.1at 668.014 kb on - strand, within Xcc-8004.719.1at 668.014 kb on - strand, within Xcc-8004.719.1at 668.014 kb on - strand, within Xcc-8004.719.1at 668.014 kb on - strand, within Xcc-8004.719.1at 668.014 kb on - strand, within Xcc-8004.719.1at 668.014 kb on - strand, within Xcc-8004.719.1at 668.014 kb on - strand, within Xcc-8004.719.1at 668.046 kb on + strand, within Xcc-8004.719.1at 668.047 kb on - strand, within Xcc-8004.719.1at 668.076 kb on + strand, within Xcc-8004.719.1at 668.076 kb on + strand, within Xcc-8004.719.1at 668.076 kb on + strand, within Xcc-8004.719.1at 668.076 kb on + strand, within Xcc-8004.719.1at 668.077 kb on - strand, within Xcc-8004.719.1at 668.077 kb on - strand, within Xcc-8004.719.1at 668.077 kb on - strand, within Xcc-8004.719.1at 668.077 kb on - strand, within Xcc-8004.719.1at 668.077 kb on - strand, within Xcc-8004.719.1at 668.094 kb on + strand, within Xcc-8004.719.1at 668.094 kb on + strand, within Xcc-8004.719.1at 668.094 kb on + strand, within Xcc-8004.719.1at 668.095 kb on - strand, within Xcc-8004.719.1at 668.095 kb on - strand, within Xcc-8004.719.1at 668.095 kb on - strand, within Xcc-8004.719.1at 668.115 kb on + strand, within Xcc-8004.719.1at 668.115 kb on + strand, within Xcc-8004.719.1at 668.115 kb on + strand, within Xcc-8004.719.1at 668.116 kb on - strand, within Xcc-8004.719.1at 668.116 kb on - strand, within Xcc-8004.719.1at 668.116 kb on - strand, within Xcc-8004.719.1at 668.116 kb on - strand, within Xcc-8004.719.1at 668.116 kb on - strand, within Xcc-8004.719.1at 668.259 kb on + strand, within Xcc-8004.719.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
remove
666,154 + Xcc-8004.716.1 0.38 +0.7
666,155 - Xcc-8004.716.1 0.38 -0.7
666,155 - Xcc-8004.716.1 0.38 +0.1
666,155 - Xcc-8004.716.1 0.38 +1.0
666,155 - Xcc-8004.716.1 0.38 -0.4
666,392 + Xcc-8004.716.1 0.61 +0.3
666,392 + Xcc-8004.716.1 0.61 +0.0
666,393 - Xcc-8004.716.1 0.61 +1.3
666,747 - +1.6
666,814 + +0.2
666,814 + -0.7
666,814 + +0.5
666,815 - +1.0
666,815 - +0.6
666,839 - +1.2
666,850 + -0.7
666,851 - +0.4
666,910 + +0.1
666,969 + Xcc-8004.718.1 0.18 -1.2
667,512 + -0.7
667,512 + -0.7
667,513 - +0.1
667,513 - -0.1
667,635 + Xcc-8004.719.1 0.12 +1.1
667,635 + Xcc-8004.719.1 0.12 +0.5
667,635 + Xcc-8004.719.1 0.12 +1.2
667,636 - Xcc-8004.719.1 0.12 +0.8
667,636 - Xcc-8004.719.1 0.12 -0.5
667,710 + Xcc-8004.719.1 0.15 +0.3
667,711 - Xcc-8004.719.1 0.15 +0.6
667,711 - Xcc-8004.719.1 0.15 -0.6
667,714 + Xcc-8004.719.1 0.15 -0.0
667,714 + Xcc-8004.719.1 0.15 +3.2
667,714 + Xcc-8004.719.1 0.15 +1.0
667,714 + Xcc-8004.719.1 0.15 +0.5
667,715 - Xcc-8004.719.1 0.15 -0.6
667,715 - Xcc-8004.719.1 0.15 -1.2
667,715 - Xcc-8004.719.1 0.15 -1.5
667,715 - Xcc-8004.719.1 0.15 +0.3
667,715 - Xcc-8004.719.1 0.15 -1.6
667,715 - Xcc-8004.719.1 0.15 +1.0
667,715 - Xcc-8004.719.1 0.15 -0.5
667,715 - Xcc-8004.719.1 0.15 -0.5
667,833 + Xcc-8004.719.1 0.20 -0.2
667,833 + Xcc-8004.719.1 0.20 -1.2
667,833 + Xcc-8004.719.1 0.20 +0.8
667,833 + Xcc-8004.719.1 0.20 -1.9
667,834 - Xcc-8004.719.1 0.20 -0.2
667,834 - Xcc-8004.719.1 0.20 -0.5
667,834 - Xcc-8004.719.1 0.20 -1.1
667,834 - Xcc-8004.719.1 0.20 -0.4
667,834 - Xcc-8004.719.1 0.20 +1.0
667,835 + Xcc-8004.719.1 0.20 -0.2
668,007 + Xcc-8004.719.1 0.27 -0.2
668,007 + Xcc-8004.719.1 0.27 +0.9
668,007 + Xcc-8004.719.1 0.27 -0.5
668,007 + Xcc-8004.719.1 0.27 -1.0
668,007 + Xcc-8004.719.1 0.27 +0.0
668,007 + Xcc-8004.719.1 0.27 -1.5
668,007 + Xcc-8004.719.1 0.27 -0.6
668,007 + Xcc-8004.719.1 0.27 -0.5
668,008 - Xcc-8004.719.1 0.27 +0.1
668,008 - Xcc-8004.719.1 0.27 +0.3
668,008 - Xcc-8004.719.1 0.27 -0.8
668,008 - Xcc-8004.719.1 0.27 +0.8
668,008 - Xcc-8004.719.1 0.27 -0.2
668,008 - Xcc-8004.719.1 0.27 +0.7
668,008 - Xcc-8004.719.1 0.27 -0.6
668,013 + Xcc-8004.719.1 0.27 -0.5
668,013 + Xcc-8004.719.1 0.27 +1.2
668,013 + Xcc-8004.719.1 0.27 -0.7
668,013 + Xcc-8004.719.1 0.27 -1.1
668,013 + Xcc-8004.719.1 0.27 -1.0
668,013 + Xcc-8004.719.1 0.27 +2.3
668,013 + Xcc-8004.719.1 0.27 -1.7
668,013 + Xcc-8004.719.1 0.27 +0.3
668,013 + Xcc-8004.719.1 0.27 -0.1
668,014 - Xcc-8004.719.1 0.27 -0.2
668,014 - Xcc-8004.719.1 0.27 +0.6
668,014 - Xcc-8004.719.1 0.27 -1.7
668,014 - Xcc-8004.719.1 0.27 +0.3
668,014 - Xcc-8004.719.1 0.27 -0.4
668,014 - Xcc-8004.719.1 0.27 +0.7
668,014 - Xcc-8004.719.1 0.27 -0.0
668,014 - Xcc-8004.719.1 0.27 -0.6
668,014 - Xcc-8004.719.1 0.27 -0.2
668,046 + Xcc-8004.719.1 0.28 +0.8
668,047 - Xcc-8004.719.1 0.29 -1.1
668,076 + Xcc-8004.719.1 0.30 -0.3
668,076 + Xcc-8004.719.1 0.30 +0.5
668,076 + Xcc-8004.719.1 0.30 -0.3
668,076 + Xcc-8004.719.1 0.30 +0.3
668,077 - Xcc-8004.719.1 0.30 +0.3
668,077 - Xcc-8004.719.1 0.30 -0.9
668,077 - Xcc-8004.719.1 0.30 +0.8
668,077 - Xcc-8004.719.1 0.30 +1.6
668,077 - Xcc-8004.719.1 0.30 +0.1
668,094 + Xcc-8004.719.1 0.30 -0.3
668,094 + Xcc-8004.719.1 0.30 +0.1
668,094 + Xcc-8004.719.1 0.30 +0.7
668,095 - Xcc-8004.719.1 0.30 -0.1
668,095 - Xcc-8004.719.1 0.30 +0.1
668,095 - Xcc-8004.719.1 0.30 -0.9
668,115 + Xcc-8004.719.1 0.31 +2.4
668,115 + Xcc-8004.719.1 0.31 -2.2
668,115 + Xcc-8004.719.1 0.31 +0.4
668,116 - Xcc-8004.719.1 0.31 +0.3
668,116 - Xcc-8004.719.1 0.31 -1.6
668,116 - Xcc-8004.719.1 0.31 -0.7
668,116 - Xcc-8004.719.1 0.31 +0.3
668,116 - Xcc-8004.719.1 0.31 +0.0
668,259 + Xcc-8004.719.1 0.37 +1.3

Or see this region's nucleotide sequence