Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.585.1

Experiment: Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.583.1 and Xcc-8004.584.1 are separated by 114 nucleotidesXcc-8004.584.1 and Xcc-8004.585.1 overlap by 4 nucleotidesXcc-8004.585.1 and Xcc-8004.586.1 overlap by 4 nucleotidesXcc-8004.586.1 and Xcc-8004.587.1 overlap by 4 nucleotides Xcc-8004.583.1: Xcc-8004.583.1 - serine/threonine protein kinase, at 540,983 to 541,633 Xcc-8004.583.1 Xcc-8004.584.1: Xcc-8004.584.1 - Na(+) H(+) antiporter subunit G, at 541,748 to 542,170 Xcc-8004.584.1 Xcc-8004.585.1: Xcc-8004.585.1 - Na(+) H(+) antiporter subunit F, at 542,167 to 542,451 Xcc-8004.585.1 Xcc-8004.586.1: Xcc-8004.586.1 - Na(+) H(+) antiporter subunit E, at 542,448 to 542,954 Xcc-8004.586.1 Xcc-8004.587.1: Xcc-8004.587.1 - Na(+) H(+) antiporter subunit D, at 542,951 to 544,510 Xcc-8004.587.1 Position (kb) 542 543Strain fitness (log2 ratio) -2 -1 0 1at 541.272 kb on + strand, within Xcc-8004.583.1at 541.272 kb on + strand, within Xcc-8004.583.1at 541.272 kb on + strand, within Xcc-8004.583.1at 541.273 kb on - strand, within Xcc-8004.583.1at 541.273 kb on - strand, within Xcc-8004.583.1at 541.273 kb on - strand, within Xcc-8004.583.1at 541.273 kb on - strand, within Xcc-8004.583.1at 541.304 kb on + strand, within Xcc-8004.583.1at 541.304 kb on + strand, within Xcc-8004.583.1at 541.304 kb on + strand, within Xcc-8004.583.1at 541.305 kb on - strand, within Xcc-8004.583.1at 541.305 kb on - strand, within Xcc-8004.583.1at 541.379 kb on + strand, within Xcc-8004.583.1at 541.380 kb on - strand, within Xcc-8004.583.1at 541.457 kb on + strand, within Xcc-8004.583.1at 541.490 kb on + strand, within Xcc-8004.583.1at 541.490 kb on + strand, within Xcc-8004.583.1at 541.490 kb on + strand, within Xcc-8004.583.1at 541.490 kb on + strand, within Xcc-8004.583.1at 541.490 kb on + strand, within Xcc-8004.583.1at 541.490 kb on + strand, within Xcc-8004.583.1at 541.490 kb on + strand, within Xcc-8004.583.1at 541.490 kb on + strand, within Xcc-8004.583.1at 541.490 kb on + strand, within Xcc-8004.583.1at 541.490 kb on + strand, within Xcc-8004.583.1at 541.491 kb on - strand, within Xcc-8004.583.1at 541.491 kb on - strand, within Xcc-8004.583.1at 541.491 kb on - strand, within Xcc-8004.583.1at 541.491 kb on - strand, within Xcc-8004.583.1at 541.613 kb on + strandat 541.613 kb on + strandat 541.613 kb on + strandat 541.613 kb on + strandat 541.614 kb on - strandat 541.614 kb on - strandat 541.689 kb on + strandat 541.689 kb on + strandat 541.690 kb on - strandat 541.690 kb on - strandat 541.690 kb on - strandat 542.196 kb on - strand, within Xcc-8004.585.1at 542.196 kb on - strand, within Xcc-8004.585.1at 542.196 kb on - strand, within Xcc-8004.585.1at 542.440 kb on - strandat 542.440 kb on - strandat 542.440 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
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541,272 + Xcc-8004.583.1 0.44 +0.8
541,272 + Xcc-8004.583.1 0.44 -0.8
541,272 + Xcc-8004.583.1 0.44 +0.7
541,273 - Xcc-8004.583.1 0.45 -0.8
541,273 - Xcc-8004.583.1 0.45 -0.8
541,273 - Xcc-8004.583.1 0.45 -0.6
541,273 - Xcc-8004.583.1 0.45 +1.2
541,304 + Xcc-8004.583.1 0.49 -1.3
541,304 + Xcc-8004.583.1 0.49 -0.8
541,304 + Xcc-8004.583.1 0.49 +0.5
541,305 - Xcc-8004.583.1 0.49 +0.5
541,305 - Xcc-8004.583.1 0.49 -0.0
541,379 + Xcc-8004.583.1 0.61 +0.7
541,380 - Xcc-8004.583.1 0.61 +0.3
541,457 + Xcc-8004.583.1 0.73 -0.4
541,490 + Xcc-8004.583.1 0.78 -0.1
541,490 + Xcc-8004.583.1 0.78 -0.4
541,490 + Xcc-8004.583.1 0.78 +1.2
541,490 + Xcc-8004.583.1 0.78 -0.5
541,490 + Xcc-8004.583.1 0.78 -0.4
541,490 + Xcc-8004.583.1 0.78 +0.2
541,490 + Xcc-8004.583.1 0.78 +0.2
541,490 + Xcc-8004.583.1 0.78 +0.3
541,490 + Xcc-8004.583.1 0.78 -1.5
541,490 + Xcc-8004.583.1 0.78 +1.3
541,491 - Xcc-8004.583.1 0.78 -0.0
541,491 - Xcc-8004.583.1 0.78 -0.1
541,491 - Xcc-8004.583.1 0.78 +0.8
541,491 - Xcc-8004.583.1 0.78 -0.0
541,613 + -0.3
541,613 + +1.1
541,613 + -0.0
541,613 + -1.1
541,614 - +0.2
541,614 - -0.4
541,689 + -0.7
541,689 + -0.6
541,690 - +0.8
541,690 - -0.0
541,690 - -0.3
542,196 - Xcc-8004.585.1 0.10 -0.8
542,196 - Xcc-8004.585.1 0.10 +0.1
542,196 - Xcc-8004.585.1 0.10 -1.5
542,440 - -1.8
542,440 - -0.2
542,440 - -0.8

Or see this region's nucleotide sequence