Experiment: Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5352.1 and Xcc-8004.5353.1 overlap by 4 nucleotides Xcc-8004.5353.1 and Xcc-8004.5354.1 overlap by 4 nucleotides
Xcc-8004.5352.1: Xcc-8004.5352.1 - Exodeoxyribonuclease V alpha chain (EC 3.1.11.5), at 5,079,498 to 5,081,735
Xcc-8004.5352.1
Xcc-8004.5353.1: Xcc-8004.5353.1 - Exodeoxyribonuclease V beta chain (EC 3.1.11.5), at 5,081,732 to 5,085,850
Xcc-8004.5353.1
Xcc-8004.5354.1: Xcc-8004.5354.1 - Exodeoxyribonuclease V gamma chain (EC 3.1.11.5), at 5,085,847 to 5,089,251
Xcc-8004.5354.1
Position (kb) 5081
5082
5083
5084
5085
5086 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5081.198 kb on - strand, within Xcc-8004.5352.1 at 5081.198 kb on - strand, within Xcc-8004.5352.1 at 5081.198 kb on - strand, within Xcc-8004.5352.1 at 5081.281 kb on - strand, within Xcc-8004.5352.1 at 5081.356 kb on - strand, within Xcc-8004.5352.1 at 5081.679 kb on + strand at 5081.679 kb on + strand at 5081.679 kb on + strand at 5081.679 kb on + strand at 5081.679 kb on + strand at 5081.679 kb on + strand at 5081.680 kb on - strand at 5081.680 kb on - strand at 5081.761 kb on + strand at 5081.761 kb on + strand at 5081.761 kb on + strand at 5081.761 kb on + strand at 5081.761 kb on + strand at 5081.761 kb on + strand at 5081.761 kb on + strand at 5081.761 kb on + strand at 5081.761 kb on + strand at 5081.761 kb on + strand at 5081.761 kb on + strand at 5081.761 kb on + strand at 5081.761 kb on + strand at 5081.761 kb on + strand at 5081.762 kb on - strand at 5081.762 kb on - strand at 5081.762 kb on - strand at 5081.762 kb on - strand at 5081.762 kb on - strand at 5081.762 kb on - strand at 5081.762 kb on - strand at 5081.762 kb on - strand at 5081.762 kb on - strand at 5081.762 kb on - strand at 5081.762 kb on - strand at 5081.801 kb on + strand at 5081.801 kb on + strand at 5081.801 kb on + strand at 5081.801 kb on + strand at 5081.801 kb on + strand at 5081.801 kb on + strand at 5081.802 kb on - strand at 5081.802 kb on - strand at 5081.909 kb on - strand at 5082.253 kb on - strand, within Xcc-8004.5353.1 at 5083.247 kb on - strand, within Xcc-8004.5353.1 at 5085.806 kb on + strand at 5085.823 kb on - strand at 5085.823 kb on - strand at 5085.823 kb on - strand at 5085.823 kb on - strand at 5085.823 kb on - strand at 5085.823 kb on - strand at 5085.823 kb on - strand at 5086.808 kb on - strand, within Xcc-8004.5354.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x remove 5,081,198 - Xcc-8004.5352.1 0.76 -0.5 5,081,198 - Xcc-8004.5352.1 0.76 +0.9 5,081,198 - Xcc-8004.5352.1 0.76 -0.6 5,081,281 - Xcc-8004.5352.1 0.80 -0.1 5,081,356 - Xcc-8004.5352.1 0.83 -1.9 5,081,679 + +2.5 5,081,679 + +2.2 5,081,679 + +1.3 5,081,679 + -1.0 5,081,679 + -0.3 5,081,679 + -2.3 5,081,680 - -3.1 5,081,680 - -0.8 5,081,761 + +0.2 5,081,761 + -0.1 5,081,761 + +0.5 5,081,761 + +0.9 5,081,761 + +0.3 5,081,761 + -0.0 5,081,761 + -0.3 5,081,761 + -1.3 5,081,761 + +0.3 5,081,761 + +0.2 5,081,761 + +0.9 5,081,761 + +1.1 5,081,761 + +0.1 5,081,761 + +0.6 5,081,762 - +0.4 5,081,762 - -0.1 5,081,762 - -0.1 5,081,762 - -0.4 5,081,762 - +0.7 5,081,762 - -1.0 5,081,762 - -0.3 5,081,762 - -0.0 5,081,762 - +1.8 5,081,762 - +0.6 5,081,762 - +0.1 5,081,801 + -0.6 5,081,801 + +1.9 5,081,801 + +0.4 5,081,801 + -0.1 5,081,801 + +1.9 5,081,801 + -0.0 5,081,802 - +0.4 5,081,802 - +0.9 5,081,909 - -2.1 5,082,253 - Xcc-8004.5353.1 0.13 -1.1 5,083,247 - Xcc-8004.5353.1 0.37 -0.7 5,085,806 + +0.5 5,085,823 - +0.1 5,085,823 - -0.3 5,085,823 - -0.0 5,085,823 - +1.4 5,085,823 - -0.3 5,085,823 - -0.1 5,085,823 - +0.3 5,086,808 - Xcc-8004.5354.1 0.28 -0.7
Or see this region's nucleotide sequence