Experiment: Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5202.1 and Xcc-8004.5203.1 overlap by 4 nucleotides Xcc-8004.5203.1 and Xcc-8004.5204.1 are separated by 15 nucleotides Xcc-8004.5204.1 and Xcc-8004.5205.1 are separated by 72 nucleotides Xcc-8004.5205.1 and Xcc-8004.5206.1 are separated by 70 nucleotides
Xcc-8004.5202.1: Xcc-8004.5202.1 - Twin-arginine translocation protein TatC, at 4,938,699 to 4,939,436
Xcc-8004.5202.1
Xcc-8004.5203.1: Xcc-8004.5203.1 - Twin-arginine translocation protein TatB, at 4,939,433 to 4,940,020
Xcc-8004.5203.1
Xcc-8004.5204.1: Xcc-8004.5204.1 - Twin-arginine translocation protein TatA, at 4,940,036 to 4,940,263
Xcc-8004.5204.1
Xcc-8004.5205.1: Xcc-8004.5205.1 - FIG01210461: hypothetical protein, at 4,940,336 to 4,941,232
Xcc-8004.5205.1
Xcc-8004.5206.1: Xcc-8004.5206.1 - Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1), at 4,941,303 to 4,942,352
Xcc-8004.5206.1
Position (kb) 4940
4941
4942 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4939.783 kb on + strand, within Xcc-8004.5203.1 at 4939.783 kb on + strand, within Xcc-8004.5203.1 at 4939.784 kb on - strand, within Xcc-8004.5203.1 at 4940.287 kb on + strand at 4940.288 kb on - strand at 4940.288 kb on - strand at 4940.288 kb on - strand at 4940.556 kb on + strand, within Xcc-8004.5205.1 at 4940.556 kb on + strand, within Xcc-8004.5205.1 at 4940.556 kb on + strand, within Xcc-8004.5205.1 at 4940.557 kb on - strand, within Xcc-8004.5205.1 at 4940.557 kb on - strand, within Xcc-8004.5205.1 at 4941.139 kb on + strand, within Xcc-8004.5205.1 at 4941.139 kb on + strand, within Xcc-8004.5205.1 at 4941.139 kb on + strand, within Xcc-8004.5205.1 at 4941.140 kb on - strand, within Xcc-8004.5205.1 at 4941.263 kb on + strand at 4941.263 kb on + strand at 4941.264 kb on - strand at 4941.282 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x remove 4,939,783 + Xcc-8004.5203.1 0.60 +1.5 4,939,783 + Xcc-8004.5203.1 0.60 +2.5 4,939,784 - Xcc-8004.5203.1 0.60 +0.7 4,940,287 + -1.9 4,940,288 - -0.6 4,940,288 - +0.4 4,940,288 - -3.0 4,940,556 + Xcc-8004.5205.1 0.25 -1.7 4,940,556 + Xcc-8004.5205.1 0.25 -1.1 4,940,556 + Xcc-8004.5205.1 0.25 -0.9 4,940,557 - Xcc-8004.5205.1 0.25 +0.4 4,940,557 - Xcc-8004.5205.1 0.25 -1.3 4,941,139 + Xcc-8004.5205.1 0.90 -2.3 4,941,139 + Xcc-8004.5205.1 0.90 -3.4 4,941,139 + Xcc-8004.5205.1 0.90 -0.1 4,941,140 - Xcc-8004.5205.1 0.90 -0.1 4,941,263 + -0.2 4,941,263 + -1.9 4,941,264 - -3.2 4,941,282 + -0.4
Or see this region's nucleotide sequence