Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4510.1

Experiment: Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4508.1 and Xcc-8004.4510.1 are separated by 40 nucleotidesXcc-8004.4510.1 and Xcc-8004.4513.1 overlap by 4 nucleotidesXcc-8004.4513.1 and Xcc-8004.4514.1 overlap by 4 nucleotides Xcc-8004.4508.1: Xcc-8004.4508.1 - Kinase, at 4,311,374 to 4,313,668 Xcc-8004.4508.1 Xcc-8004.4510.1: Xcc-8004.4510.1 - ATP binding component of ABC-transporter, at 4,313,709 to 4,314,995 Xcc-8004.4510.1 Xcc-8004.4513.1: Xcc-8004.4513.1 - O-antigen export system permease protein RfbD, at 4,314,992 to 4,315,864 Xcc-8004.4513.1 Xcc-8004.4514.1: Xcc-8004.4514.1 - Glycosyltransferase, at 4,315,861 to 4,317,246 Xcc-8004.4514.1 Position (kb) 4313 4314 4315Strain fitness (log2 ratio) -2 -1 0 1 2at 4313.648 kb on + strandat 4313.648 kb on + strandat 4313.650 kb on + strandat 4314.061 kb on + strand, within Xcc-8004.4510.1at 4314.325 kb on + strand, within Xcc-8004.4510.1at 4314.800 kb on + strand, within Xcc-8004.4510.1at 4314.987 kb on - strandat 4314.987 kb on - strandat 4314.987 kb on - strandat 4314.987 kb on - strandat 4314.987 kb on - strandat 4314.996 kb on - strandat 4315.790 kb on + strandat 4315.791 kb on - strandat 4315.808 kb on + strandat 4315.808 kb on + strandat 4315.808 kb on + strandat 4315.808 kb on + strandat 4315.809 kb on - strandat 4315.809 kb on - strandat 4315.809 kb on - strandat 4315.809 kb on - strandat 4315.809 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
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4,313,648 + -0.5
4,313,648 + -0.7
4,313,650 + -0.2
4,314,061 + Xcc-8004.4510.1 0.27 -1.9
4,314,325 + Xcc-8004.4510.1 0.48 -1.7
4,314,800 + Xcc-8004.4510.1 0.85 +0.6
4,314,987 - -0.1
4,314,987 - +0.2
4,314,987 - +0.2
4,314,987 - -0.6
4,314,987 - -0.1
4,314,996 - +2.5
4,315,790 + -0.1
4,315,791 - +0.0
4,315,808 + +0.2
4,315,808 + +0.3
4,315,808 + -1.7
4,315,808 + -2.1
4,315,809 - +0.3
4,315,809 - +0.6
4,315,809 - -1.9
4,315,809 - +0.5
4,315,809 - -0.5

Or see this region's nucleotide sequence