Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4508.1

Experiment: Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.4507.1 and Xcc-8004.4508.1 are separated by 34 nucleotidesXcc-8004.4508.1 and Xcc-8004.4510.1 are separated by 40 nucleotides Xcc-8004.4507.1: Xcc-8004.4507.1 - Glycosyltransferase, at 4,310,260 to 4,311,339 Xcc-8004.4507.1 Xcc-8004.4508.1: Xcc-8004.4508.1 - Kinase, at 4,311,374 to 4,313,668 Xcc-8004.4508.1 Xcc-8004.4510.1: Xcc-8004.4510.1 - ATP binding component of ABC-transporter, at 4,313,709 to 4,314,995 Xcc-8004.4510.1 Position (kb) 4311 4312 4313 4314Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4310.638 kb on + strand, within Xcc-8004.4507.1at 4310.698 kb on - strand, within Xcc-8004.4507.1at 4310.755 kb on + strand, within Xcc-8004.4507.1at 4310.756 kb on - strand, within Xcc-8004.4507.1at 4310.756 kb on - strand, within Xcc-8004.4507.1at 4310.778 kb on - strand, within Xcc-8004.4507.1at 4310.778 kb on - strand, within Xcc-8004.4507.1at 4310.786 kb on + strand, within Xcc-8004.4507.1at 4310.799 kb on + strand, within Xcc-8004.4507.1at 4310.829 kb on - strand, within Xcc-8004.4507.1at 4310.830 kb on + strand, within Xcc-8004.4507.1at 4310.830 kb on + strand, within Xcc-8004.4507.1at 4311.008 kb on + strand, within Xcc-8004.4507.1at 4311.009 kb on - strand, within Xcc-8004.4507.1at 4311.009 kb on - strand, within Xcc-8004.4507.1at 4311.065 kb on + strand, within Xcc-8004.4507.1at 4311.065 kb on + strand, within Xcc-8004.4507.1at 4311.066 kb on - strand, within Xcc-8004.4507.1at 4311.066 kb on - strand, within Xcc-8004.4507.1at 4311.066 kb on - strand, within Xcc-8004.4507.1at 4311.092 kb on - strand, within Xcc-8004.4507.1at 4311.092 kb on - strand, within Xcc-8004.4507.1at 4311.348 kb on + strandat 4311.349 kb on - strandat 4311.349 kb on - strandat 4311.366 kb on + strandat 4311.388 kb on + strandat 4311.422 kb on + strandat 4311.455 kb on - strandat 4311.455 kb on - strandat 4311.455 kb on - strandat 4311.455 kb on - strandat 4311.455 kb on - strandat 4311.455 kb on - strandat 4311.546 kb on - strandat 4311.657 kb on + strand, within Xcc-8004.4508.1at 4311.658 kb on - strand, within Xcc-8004.4508.1at 4311.658 kb on - strand, within Xcc-8004.4508.1at 4311.689 kb on - strand, within Xcc-8004.4508.1at 4311.721 kb on + strand, within Xcc-8004.4508.1at 4311.721 kb on + strand, within Xcc-8004.4508.1at 4311.721 kb on + strand, within Xcc-8004.4508.1at 4311.722 kb on - strand, within Xcc-8004.4508.1at 4311.800 kb on - strand, within Xcc-8004.4508.1at 4312.105 kb on - strand, within Xcc-8004.4508.1at 4312.168 kb on + strand, within Xcc-8004.4508.1at 4312.168 kb on + strand, within Xcc-8004.4508.1at 4312.168 kb on + strand, within Xcc-8004.4508.1at 4312.168 kb on + strand, within Xcc-8004.4508.1at 4312.168 kb on + strand, within Xcc-8004.4508.1at 4312.169 kb on - strand, within Xcc-8004.4508.1at 4312.169 kb on - strand, within Xcc-8004.4508.1at 4312.169 kb on - strand, within Xcc-8004.4508.1at 4312.171 kb on + strand, within Xcc-8004.4508.1at 4312.172 kb on - strand, within Xcc-8004.4508.1at 4312.237 kb on + strand, within Xcc-8004.4508.1at 4312.250 kb on - strand, within Xcc-8004.4508.1at 4312.261 kb on + strand, within Xcc-8004.4508.1at 4312.293 kb on + strand, within Xcc-8004.4508.1at 4312.293 kb on + strand, within Xcc-8004.4508.1at 4313.648 kb on + strandat 4313.648 kb on + strandat 4313.650 kb on + strandat 4314.061 kb on + strand, within Xcc-8004.4510.1at 4314.325 kb on + strand, within Xcc-8004.4510.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
remove
4,310,638 + Xcc-8004.4507.1 0.35 +0.9
4,310,698 - Xcc-8004.4507.1 0.41 +0.3
4,310,755 + Xcc-8004.4507.1 0.46 -1.7
4,310,756 - Xcc-8004.4507.1 0.46 -1.1
4,310,756 - Xcc-8004.4507.1 0.46 -0.3
4,310,778 - Xcc-8004.4507.1 0.48 -2.3
4,310,778 - Xcc-8004.4507.1 0.48 -0.1
4,310,786 + Xcc-8004.4507.1 0.49 -1.0
4,310,799 + Xcc-8004.4507.1 0.50 -1.5
4,310,829 - Xcc-8004.4507.1 0.53 -1.9
4,310,830 + Xcc-8004.4507.1 0.53 -0.9
4,310,830 + Xcc-8004.4507.1 0.53 +0.9
4,311,008 + Xcc-8004.4507.1 0.69 +0.9
4,311,009 - Xcc-8004.4507.1 0.69 -1.4
4,311,009 - Xcc-8004.4507.1 0.69 +0.7
4,311,065 + Xcc-8004.4507.1 0.75 -1.5
4,311,065 + Xcc-8004.4507.1 0.75 -0.9
4,311,066 - Xcc-8004.4507.1 0.75 -2.7
4,311,066 - Xcc-8004.4507.1 0.75 -0.7
4,311,066 - Xcc-8004.4507.1 0.75 +2.2
4,311,092 - Xcc-8004.4507.1 0.77 +0.1
4,311,092 - Xcc-8004.4507.1 0.77 +0.3
4,311,348 + -0.1
4,311,349 - -0.7
4,311,349 - +0.3
4,311,366 + +0.6
4,311,388 + +0.5
4,311,422 + -1.1
4,311,455 - -0.7
4,311,455 - -0.0
4,311,455 - -0.7
4,311,455 - -1.8
4,311,455 - -0.1
4,311,455 - -2.1
4,311,546 - -0.9
4,311,657 + Xcc-8004.4508.1 0.12 -0.7
4,311,658 - Xcc-8004.4508.1 0.12 -0.7
4,311,658 - Xcc-8004.4508.1 0.12 -0.3
4,311,689 - Xcc-8004.4508.1 0.14 -1.1
4,311,721 + Xcc-8004.4508.1 0.15 -0.4
4,311,721 + Xcc-8004.4508.1 0.15 +2.5
4,311,721 + Xcc-8004.4508.1 0.15 -2.1
4,311,722 - Xcc-8004.4508.1 0.15 -1.0
4,311,800 - Xcc-8004.4508.1 0.19 +0.1
4,312,105 - Xcc-8004.4508.1 0.32 -0.1
4,312,168 + Xcc-8004.4508.1 0.35 -0.7
4,312,168 + Xcc-8004.4508.1 0.35 -0.5
4,312,168 + Xcc-8004.4508.1 0.35 -1.4
4,312,168 + Xcc-8004.4508.1 0.35 -1.7
4,312,168 + Xcc-8004.4508.1 0.35 -0.8
4,312,169 - Xcc-8004.4508.1 0.35 -0.3
4,312,169 - Xcc-8004.4508.1 0.35 +0.2
4,312,169 - Xcc-8004.4508.1 0.35 +0.2
4,312,171 + Xcc-8004.4508.1 0.35 -0.7
4,312,172 - Xcc-8004.4508.1 0.35 -0.7
4,312,237 + Xcc-8004.4508.1 0.38 -1.7
4,312,250 - Xcc-8004.4508.1 0.38 +0.5
4,312,261 + Xcc-8004.4508.1 0.39 -1.2
4,312,293 + Xcc-8004.4508.1 0.40 -2.9
4,312,293 + Xcc-8004.4508.1 0.40 -1.4
4,313,648 + -0.5
4,313,648 + -0.7
4,313,650 + -0.2
4,314,061 + Xcc-8004.4510.1 0.27 -1.9
4,314,325 + Xcc-8004.4510.1 0.48 -1.7

Or see this region's nucleotide sequence