Experiment: Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4301.1 and Xcc-8004.4302.1 are separated by 80 nucleotides Xcc-8004.4302.1 and Xcc-8004.4303.1 are separated by 203 nucleotides
Xcc-8004.4301.1: Xcc-8004.4301.1 - Nucleoside permease NupC, at 4,116,881 to 4,118,179
Xcc-8004.4301.1
Xcc-8004.4302.1: Xcc-8004.4302.1 - Ribokinase (EC 2.7.1.15), at 4,118,260 to 4,119,216
Xcc-8004.4302.1
Xcc-8004.4303.1: Xcc-8004.4303.1 - tRNA dihydrouridine synthase B (EC 1.-.-.-), at 4,119,420 to 4,120,826
Xcc-8004.4303.1
Position (kb) 4118
4119
4120 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4117.367 kb on + strand, within Xcc-8004.4301.1 at 4117.367 kb on + strand, within Xcc-8004.4301.1 at 4117.367 kb on + strand, within Xcc-8004.4301.1 at 4117.368 kb on - strand, within Xcc-8004.4301.1 at 4117.451 kb on + strand, within Xcc-8004.4301.1 at 4117.452 kb on - strand, within Xcc-8004.4301.1 at 4117.496 kb on + strand, within Xcc-8004.4301.1 at 4117.923 kb on - strand, within Xcc-8004.4301.1 at 4118.000 kb on + strand, within Xcc-8004.4301.1 at 4118.000 kb on + strand, within Xcc-8004.4301.1 at 4118.000 kb on + strand, within Xcc-8004.4301.1 at 4118.000 kb on + strand, within Xcc-8004.4301.1 at 4118.001 kb on - strand, within Xcc-8004.4301.1 at 4118.001 kb on - strand, within Xcc-8004.4301.1 at 4118.001 kb on - strand, within Xcc-8004.4301.1 at 4118.209 kb on + strand at 4118.235 kb on + strand at 4118.235 kb on + strand at 4118.235 kb on + strand at 4118.235 kb on + strand at 4118.236 kb on - strand at 4118.236 kb on - strand at 4118.255 kb on + strand at 4118.255 kb on + strand at 4118.255 kb on + strand at 4118.256 kb on - strand at 4118.256 kb on - strand at 4118.256 kb on - strand at 4118.256 kb on - strand at 4118.259 kb on + strand at 4118.260 kb on - strand at 4118.260 kb on - strand at 4118.353 kb on + strand at 4118.354 kb on - strand at 4118.354 kb on - strand at 4118.542 kb on + strand, within Xcc-8004.4302.1 at 4118.543 kb on - strand, within Xcc-8004.4302.1 at 4118.543 kb on - strand, within Xcc-8004.4302.1 at 4118.543 kb on - strand, within Xcc-8004.4302.1 at 4118.543 kb on - strand, within Xcc-8004.4302.1 at 4118.543 kb on - strand, within Xcc-8004.4302.1 at 4118.543 kb on - strand, within Xcc-8004.4302.1 at 4118.543 kb on - strand, within Xcc-8004.4302.1 at 4118.543 kb on - strand, within Xcc-8004.4302.1 at 4118.543 kb on - strand, within Xcc-8004.4302.1 at 4118.543 kb on - strand, within Xcc-8004.4302.1 at 4118.543 kb on - strand, within Xcc-8004.4302.1 at 4118.543 kb on - strand, within Xcc-8004.4302.1 at 4118.792 kb on + strand, within Xcc-8004.4302.1 at 4118.792 kb on + strand, within Xcc-8004.4302.1 at 4118.886 kb on + strand, within Xcc-8004.4302.1 at 4118.886 kb on + strand, within Xcc-8004.4302.1 at 4118.886 kb on + strand, within Xcc-8004.4302.1 at 4118.887 kb on - strand, within Xcc-8004.4302.1 at 4118.887 kb on - strand, within Xcc-8004.4302.1 at 4118.887 kb on - strand, within Xcc-8004.4302.1 at 4119.143 kb on - strand at 4119.229 kb on - strand at 4119.229 kb on - strand at 4119.295 kb on + strand at 4119.295 kb on + strand at 4119.295 kb on + strand at 4119.296 kb on - strand at 4119.296 kb on - strand at 4119.296 kb on - strand at 4119.296 kb on - strand at 4119.611 kb on + strand, within Xcc-8004.4303.1 at 4119.654 kb on + strand, within Xcc-8004.4303.1 at 4119.655 kb on - strand, within Xcc-8004.4303.1 at 4119.655 kb on - strand, within Xcc-8004.4303.1 at 4119.667 kb on + strand, within Xcc-8004.4303.1 at 4119.668 kb on - strand, within Xcc-8004.4303.1 at 4119.668 kb on - strand, within Xcc-8004.4303.1 at 4119.689 kb on + strand, within Xcc-8004.4303.1 at 4119.689 kb on + strand, within Xcc-8004.4303.1 at 4119.690 kb on - strand, within Xcc-8004.4303.1 at 4119.690 kb on - strand, within Xcc-8004.4303.1 at 4119.736 kb on + strand, within Xcc-8004.4303.1 at 4119.736 kb on + strand, within Xcc-8004.4303.1 at 4119.737 kb on - strand, within Xcc-8004.4303.1 at 4119.737 kb on - strand, within Xcc-8004.4303.1 at 4119.772 kb on - strand, within Xcc-8004.4303.1 at 4119.816 kb on + strand, within Xcc-8004.4303.1 at 4119.816 kb on + strand, within Xcc-8004.4303.1 at 4119.816 kb on + strand, within Xcc-8004.4303.1 at 4119.816 kb on + strand, within Xcc-8004.4303.1 at 4119.816 kb on + strand, within Xcc-8004.4303.1 at 4119.817 kb on - strand, within Xcc-8004.4303.1 at 4119.817 kb on - strand, within Xcc-8004.4303.1 at 4119.817 kb on - strand, within Xcc-8004.4303.1 at 4119.817 kb on - strand, within Xcc-8004.4303.1 at 4119.817 kb on - strand, within Xcc-8004.4303.1 at 4119.843 kb on + strand, within Xcc-8004.4303.1 at 4119.843 kb on + strand, within Xcc-8004.4303.1 at 4119.843 kb on + strand, within Xcc-8004.4303.1 at 4119.844 kb on - strand, within Xcc-8004.4303.1 at 4120.080 kb on + strand, within Xcc-8004.4303.1 at 4120.112 kb on + strand, within Xcc-8004.4303.1 at 4120.112 kb on + strand, within Xcc-8004.4303.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x remove 4,117,367 + Xcc-8004.4301.1 0.37 -0.9 4,117,367 + Xcc-8004.4301.1 0.37 -0.6 4,117,367 + Xcc-8004.4301.1 0.37 +0.7 4,117,368 - Xcc-8004.4301.1 0.37 +0.2 4,117,451 + Xcc-8004.4301.1 0.44 +0.9 4,117,452 - Xcc-8004.4301.1 0.44 -1.4 4,117,496 + Xcc-8004.4301.1 0.47 +0.2 4,117,923 - Xcc-8004.4301.1 0.80 +1.3 4,118,000 + Xcc-8004.4301.1 0.86 +0.5 4,118,000 + Xcc-8004.4301.1 0.86 -1.1 4,118,000 + Xcc-8004.4301.1 0.86 -0.1 4,118,000 + Xcc-8004.4301.1 0.86 -0.4 4,118,001 - Xcc-8004.4301.1 0.86 -0.4 4,118,001 - Xcc-8004.4301.1 0.86 -0.1 4,118,001 - Xcc-8004.4301.1 0.86 +1.9 4,118,209 + -0.1 4,118,235 + +0.9 4,118,235 + +1.2 4,118,235 + -1.2 4,118,235 + -0.2 4,118,236 - -0.2 4,118,236 - +0.8 4,118,255 + -1.5 4,118,255 + -0.9 4,118,255 + +1.5 4,118,256 - -0.2 4,118,256 - +1.5 4,118,256 - +1.9 4,118,256 - +0.7 4,118,259 + -1.1 4,118,260 - -0.9 4,118,260 - +0.2 4,118,353 + +0.2 4,118,354 - -0.6 4,118,354 - +1.8 4,118,542 + Xcc-8004.4302.1 0.29 -1.4 4,118,543 - Xcc-8004.4302.1 0.30 -0.6 4,118,543 - Xcc-8004.4302.1 0.30 +0.4 4,118,543 - Xcc-8004.4302.1 0.30 +0.4 4,118,543 - Xcc-8004.4302.1 0.30 -1.4 4,118,543 - Xcc-8004.4302.1 0.30 -0.6 4,118,543 - Xcc-8004.4302.1 0.30 +0.5 4,118,543 - Xcc-8004.4302.1 0.30 -0.9 4,118,543 - Xcc-8004.4302.1 0.30 +1.2 4,118,543 - Xcc-8004.4302.1 0.30 -0.6 4,118,543 - Xcc-8004.4302.1 0.30 +0.4 4,118,543 - Xcc-8004.4302.1 0.30 -1.1 4,118,543 - Xcc-8004.4302.1 0.30 -1.2 4,118,792 + Xcc-8004.4302.1 0.56 -0.9 4,118,792 + Xcc-8004.4302.1 0.56 +0.0 4,118,886 + Xcc-8004.4302.1 0.65 -0.9 4,118,886 + Xcc-8004.4302.1 0.65 -1.6 4,118,886 + Xcc-8004.4302.1 0.65 -1.1 4,118,887 - Xcc-8004.4302.1 0.66 +0.2 4,118,887 - Xcc-8004.4302.1 0.66 -1.1 4,118,887 - Xcc-8004.4302.1 0.66 -0.9 4,119,143 - -0.3 4,119,229 - -2.8 4,119,229 - +1.5 4,119,295 + -0.1 4,119,295 + -0.1 4,119,295 + +1.3 4,119,296 - -0.4 4,119,296 - -0.8 4,119,296 - -0.2 4,119,296 - +0.4 4,119,611 + Xcc-8004.4303.1 0.14 -0.8 4,119,654 + Xcc-8004.4303.1 0.17 +4.3 4,119,655 - Xcc-8004.4303.1 0.17 -0.0 4,119,655 - Xcc-8004.4303.1 0.17 +0.6 4,119,667 + Xcc-8004.4303.1 0.18 -1.5 4,119,668 - Xcc-8004.4303.1 0.18 -0.0 4,119,668 - Xcc-8004.4303.1 0.18 +0.5 4,119,689 + Xcc-8004.4303.1 0.19 +2.0 4,119,689 + Xcc-8004.4303.1 0.19 -0.6 4,119,690 - Xcc-8004.4303.1 0.19 -3.1 4,119,690 - Xcc-8004.4303.1 0.19 -0.6 4,119,736 + Xcc-8004.4303.1 0.22 +0.4 4,119,736 + Xcc-8004.4303.1 0.22 -0.0 4,119,737 - Xcc-8004.4303.1 0.23 -1.2 4,119,737 - Xcc-8004.4303.1 0.23 -0.2 4,119,772 - Xcc-8004.4303.1 0.25 -0.4 4,119,816 + Xcc-8004.4303.1 0.28 +1.0 4,119,816 + Xcc-8004.4303.1 0.28 -0.6 4,119,816 + Xcc-8004.4303.1 0.28 -0.6 4,119,816 + Xcc-8004.4303.1 0.28 -0.5 4,119,816 + Xcc-8004.4303.1 0.28 +0.8 4,119,817 - Xcc-8004.4303.1 0.28 +1.1 4,119,817 - Xcc-8004.4303.1 0.28 +0.8 4,119,817 - Xcc-8004.4303.1 0.28 -0.2 4,119,817 - Xcc-8004.4303.1 0.28 +0.1 4,119,817 - Xcc-8004.4303.1 0.28 -0.8 4,119,843 + Xcc-8004.4303.1 0.30 +1.4 4,119,843 + Xcc-8004.4303.1 0.30 +0.1 4,119,843 + Xcc-8004.4303.1 0.30 -0.3 4,119,844 - Xcc-8004.4303.1 0.30 +0.5 4,120,080 + Xcc-8004.4303.1 0.47 +1.1 4,120,112 + Xcc-8004.4303.1 0.49 -0.8 4,120,112 + Xcc-8004.4303.1 0.49 -0.0
Or see this region's nucleotide sequence