Experiment: Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4271.1 and Xcc-8004.4273.1 are separated by 77 nucleotides Xcc-8004.4273.1 and Xcc-8004.4275.1 are separated by 28 nucleotides Xcc-8004.4275.1 and Xcc-8004.4276.1 are separated by 45 nucleotides Xcc-8004.4276.1 and Xcc-8004.4277.1 are separated by 72 nucleotides
Xcc-8004.4271.1: Xcc-8004.4271.1 - SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182), at 4,090,963 to 4,091,751
Xcc-8004.4271.1
Xcc-8004.4273.1: Xcc-8004.4273.1 - ApaG protein, at 4,091,829 to 4,092,212
Xcc-8004.4273.1
Xcc-8004.4275.1: Xcc-8004.4275.1 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41), at 4,092,241 to 4,093,221
Xcc-8004.4275.1
Xcc-8004.4276.1: Xcc-8004.4276.1 - Dihydrofolate reductase (EC 1.5.1.3), at 4,093,267 to 4,093,761
Xcc-8004.4276.1
Xcc-8004.4277.1: Xcc-8004.4277.1 - Thymidylate synthase (EC 2.1.1.45), at 4,093,834 to 4,094,628
Xcc-8004.4277.1
Position (kb)
4092
4093
4094 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4091.291 kb on + strand, within Xcc-8004.4271.1 at 4091.291 kb on + strand, within Xcc-8004.4271.1 at 4091.291 kb on + strand, within Xcc-8004.4271.1 at 4091.291 kb on + strand, within Xcc-8004.4271.1 at 4091.292 kb on - strand, within Xcc-8004.4271.1 at 4091.292 kb on - strand, within Xcc-8004.4271.1 at 4091.292 kb on - strand, within Xcc-8004.4271.1 at 4091.292 kb on - strand, within Xcc-8004.4271.1 at 4091.292 kb on - strand, within Xcc-8004.4271.1 at 4091.296 kb on + strand, within Xcc-8004.4271.1 at 4091.296 kb on + strand, within Xcc-8004.4271.1 at 4091.296 kb on + strand, within Xcc-8004.4271.1 at 4091.296 kb on + strand, within Xcc-8004.4271.1 at 4091.296 kb on + strand, within Xcc-8004.4271.1 at 4091.296 kb on + strand, within Xcc-8004.4271.1 at 4091.296 kb on + strand, within Xcc-8004.4271.1 at 4091.297 kb on - strand, within Xcc-8004.4271.1 at 4091.297 kb on - strand, within Xcc-8004.4271.1 at 4091.297 kb on - strand, within Xcc-8004.4271.1 at 4091.297 kb on - strand, within Xcc-8004.4271.1 at 4091.297 kb on - strand, within Xcc-8004.4271.1 at 4091.297 kb on - strand, within Xcc-8004.4271.1 at 4091.297 kb on - strand, within Xcc-8004.4271.1 at 4091.297 kb on - strand, within Xcc-8004.4271.1 at 4091.297 kb on - strand, within Xcc-8004.4271.1 at 4091.297 kb on - strand, within Xcc-8004.4271.1 at 4091.419 kb on + strand, within Xcc-8004.4271.1 at 4091.419 kb on + strand, within Xcc-8004.4271.1 at 4091.419 kb on + strand, within Xcc-8004.4271.1 at 4091.420 kb on - strand, within Xcc-8004.4271.1 at 4091.449 kb on + strand, within Xcc-8004.4271.1 at 4091.450 kb on - strand, within Xcc-8004.4271.1 at 4091.450 kb on - strand, within Xcc-8004.4271.1 at 4091.450 kb on - strand, within Xcc-8004.4271.1 at 4091.589 kb on - strand, within Xcc-8004.4271.1 at 4091.589 kb on - strand, within Xcc-8004.4271.1 at 4091.804 kb on - strand at 4091.804 kb on - strand at 4091.804 kb on - strand at 4091.804 kb on - strand at 4091.817 kb on + strand at 4091.818 kb on - strand at 4091.925 kb on + strand, within Xcc-8004.4273.1 at 4091.926 kb on - strand, within Xcc-8004.4273.1 at 4092.078 kb on + strand, within Xcc-8004.4273.1 at 4092.078 kb on + strand, within Xcc-8004.4273.1 at 4092.078 kb on + strand, within Xcc-8004.4273.1 at 4092.078 kb on + strand, within Xcc-8004.4273.1 at 4092.078 kb on + strand, within Xcc-8004.4273.1 at 4092.078 kb on + strand, within Xcc-8004.4273.1 at 4092.078 kb on + strand, within Xcc-8004.4273.1 at 4092.078 kb on + strand, within Xcc-8004.4273.1 at 4092.078 kb on + strand, within Xcc-8004.4273.1 at 4092.079 kb on - strand, within Xcc-8004.4273.1 at 4092.079 kb on - strand, within Xcc-8004.4273.1 at 4092.079 kb on - strand, within Xcc-8004.4273.1 at 4092.079 kb on - strand, within Xcc-8004.4273.1 at 4092.079 kb on - strand, within Xcc-8004.4273.1 at 4092.079 kb on - strand, within Xcc-8004.4273.1 at 4092.126 kb on + strand, within Xcc-8004.4273.1 at 4092.126 kb on + strand, within Xcc-8004.4273.1 at 4092.126 kb on + strand, within Xcc-8004.4273.1 at 4092.126 kb on + strand, within Xcc-8004.4273.1 at 4092.126 kb on + strand, within Xcc-8004.4273.1 at 4092.127 kb on - strand, within Xcc-8004.4273.1 at 4092.127 kb on - strand, within Xcc-8004.4273.1 at 4092.127 kb on - strand, within Xcc-8004.4273.1 at 4092.127 kb on - strand, within Xcc-8004.4273.1 at 4092.129 kb on + strand, within Xcc-8004.4273.1 at 4092.129 kb on + strand, within Xcc-8004.4273.1 at 4092.129 kb on + strand, within Xcc-8004.4273.1 at 4092.129 kb on + strand, within Xcc-8004.4273.1 at 4092.129 kb on + strand, within Xcc-8004.4273.1 at 4092.130 kb on - strand, within Xcc-8004.4273.1 at 4092.130 kb on - strand, within Xcc-8004.4273.1 at 4092.130 kb on - strand, within Xcc-8004.4273.1 at 4092.130 kb on - strand, within Xcc-8004.4273.1 at 4092.277 kb on + strand at 4092.277 kb on + strand at 4092.278 kb on - strand at 4092.278 kb on - strand at 4092.278 kb on - strand at 4092.282 kb on + strand at 4092.283 kb on - strand at 4092.419 kb on + strand, within Xcc-8004.4275.1 at 4092.419 kb on + strand, within Xcc-8004.4275.1 at 4092.420 kb on - strand, within Xcc-8004.4275.1 at 4092.420 kb on - strand, within Xcc-8004.4275.1 at 4092.420 kb on - strand, within Xcc-8004.4275.1 at 4092.503 kb on + strand, within Xcc-8004.4275.1 at 4092.504 kb on - strand, within Xcc-8004.4275.1 at 4092.504 kb on - strand, within Xcc-8004.4275.1 at 4092.712 kb on + strand, within Xcc-8004.4275.1 at 4092.712 kb on + strand, within Xcc-8004.4275.1 at 4092.712 kb on + strand, within Xcc-8004.4275.1 at 4092.712 kb on + strand, within Xcc-8004.4275.1 at 4092.712 kb on + strand, within Xcc-8004.4275.1 at 4092.712 kb on + strand, within Xcc-8004.4275.1 at 4092.712 kb on + strand, within Xcc-8004.4275.1 at 4092.713 kb on - strand, within Xcc-8004.4275.1 at 4092.713 kb on - strand, within Xcc-8004.4275.1 at 4092.713 kb on - strand, within Xcc-8004.4275.1 at 4092.752 kb on - strand, within Xcc-8004.4275.1 at 4092.796 kb on + strand, within Xcc-8004.4275.1 at 4093.798 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x remove 4,091,291 + Xcc-8004.4271.1 0.42 -0.2 4,091,291 + Xcc-8004.4271.1 0.42 -0.2 4,091,291 + Xcc-8004.4271.1 0.42 -0.5 4,091,291 + Xcc-8004.4271.1 0.42 -1.6 4,091,292 - Xcc-8004.4271.1 0.42 +0.2 4,091,292 - Xcc-8004.4271.1 0.42 -1.1 4,091,292 - Xcc-8004.4271.1 0.42 +0.2 4,091,292 - Xcc-8004.4271.1 0.42 +1.9 4,091,292 - Xcc-8004.4271.1 0.42 +0.9 4,091,296 + Xcc-8004.4271.1 0.42 +0.9 4,091,296 + Xcc-8004.4271.1 0.42 -1.1 4,091,296 + Xcc-8004.4271.1 0.42 +0.2 4,091,296 + Xcc-8004.4271.1 0.42 -0.2 4,091,296 + Xcc-8004.4271.1 0.42 +0.3 4,091,296 + Xcc-8004.4271.1 0.42 -1.9 4,091,296 + Xcc-8004.4271.1 0.42 -1.4 4,091,297 - Xcc-8004.4271.1 0.42 -0.2 4,091,297 - Xcc-8004.4271.1 0.42 +0.9 4,091,297 - Xcc-8004.4271.1 0.42 -0.9 4,091,297 - Xcc-8004.4271.1 0.42 +2.1 4,091,297 - Xcc-8004.4271.1 0.42 +0.2 4,091,297 - Xcc-8004.4271.1 0.42 +0.3 4,091,297 - Xcc-8004.4271.1 0.42 -1.9 4,091,297 - Xcc-8004.4271.1 0.42 -0.6 4,091,297 - Xcc-8004.4271.1 0.42 -1.1 4,091,297 - Xcc-8004.4271.1 0.42 -0.6 4,091,419 + Xcc-8004.4271.1 0.58 +0.7 4,091,419 + Xcc-8004.4271.1 0.58 +0.2 4,091,419 + Xcc-8004.4271.1 0.58 +1.4 4,091,420 - Xcc-8004.4271.1 0.58 -0.8 4,091,449 + Xcc-8004.4271.1 0.62 -0.6 4,091,450 - Xcc-8004.4271.1 0.62 +0.0 4,091,450 - Xcc-8004.4271.1 0.62 -1.7 4,091,450 - Xcc-8004.4271.1 0.62 -0.9 4,091,589 - Xcc-8004.4271.1 0.79 -0.5 4,091,589 - Xcc-8004.4271.1 0.79 -0.6 4,091,804 - -2.0 4,091,804 - -0.8 4,091,804 - -0.6 4,091,804 - -0.5 4,091,817 + -0.4 4,091,818 - -0.1 4,091,925 + Xcc-8004.4273.1 0.25 +0.3 4,091,926 - Xcc-8004.4273.1 0.25 -0.6 4,092,078 + Xcc-8004.4273.1 0.65 -0.2 4,092,078 + Xcc-8004.4273.1 0.65 +1.8 4,092,078 + Xcc-8004.4273.1 0.65 -1.4 4,092,078 + Xcc-8004.4273.1 0.65 -2.3 4,092,078 + Xcc-8004.4273.1 0.65 -2.1 4,092,078 + Xcc-8004.4273.1 0.65 +2.3 4,092,078 + Xcc-8004.4273.1 0.65 +1.4 4,092,078 + Xcc-8004.4273.1 0.65 +1.7 4,092,078 + Xcc-8004.4273.1 0.65 -0.8 4,092,079 - Xcc-8004.4273.1 0.65 +0.1 4,092,079 - Xcc-8004.4273.1 0.65 -1.8 4,092,079 - Xcc-8004.4273.1 0.65 +1.3 4,092,079 - Xcc-8004.4273.1 0.65 +0.3 4,092,079 - Xcc-8004.4273.1 0.65 -1.9 4,092,079 - Xcc-8004.4273.1 0.65 -2.2 4,092,126 + Xcc-8004.4273.1 0.77 +0.4 4,092,126 + Xcc-8004.4273.1 0.77 +0.7 4,092,126 + Xcc-8004.4273.1 0.77 -1.9 4,092,126 + Xcc-8004.4273.1 0.77 -0.4 4,092,126 + Xcc-8004.4273.1 0.77 +0.8 4,092,127 - Xcc-8004.4273.1 0.78 +0.7 4,092,127 - Xcc-8004.4273.1 0.78 +0.1 4,092,127 - Xcc-8004.4273.1 0.78 -0.6 4,092,127 - Xcc-8004.4273.1 0.78 -0.1 4,092,129 + Xcc-8004.4273.1 0.78 -0.6 4,092,129 + Xcc-8004.4273.1 0.78 -2.2 4,092,129 + Xcc-8004.4273.1 0.78 +0.2 4,092,129 + Xcc-8004.4273.1 0.78 +0.6 4,092,129 + Xcc-8004.4273.1 0.78 +0.5 4,092,130 - Xcc-8004.4273.1 0.78 -0.1 4,092,130 - Xcc-8004.4273.1 0.78 -0.1 4,092,130 - Xcc-8004.4273.1 0.78 -0.1 4,092,130 - Xcc-8004.4273.1 0.78 +1.4 4,092,277 + -1.6 4,092,277 + -2.8 4,092,278 - +0.5 4,092,278 - -1.1 4,092,278 - +2.3 4,092,282 + +0.6 4,092,283 - -1.6 4,092,419 + Xcc-8004.4275.1 0.18 -2.9 4,092,419 + Xcc-8004.4275.1 0.18 +0.1 4,092,420 - Xcc-8004.4275.1 0.18 -1.3 4,092,420 - Xcc-8004.4275.1 0.18 -1.9 4,092,420 - Xcc-8004.4275.1 0.18 -2.0 4,092,503 + Xcc-8004.4275.1 0.27 +1.4 4,092,504 - Xcc-8004.4275.1 0.27 -2.9 4,092,504 - Xcc-8004.4275.1 0.27 -1.2 4,092,712 + Xcc-8004.4275.1 0.48 -0.5 4,092,712 + Xcc-8004.4275.1 0.48 +0.9 4,092,712 + Xcc-8004.4275.1 0.48 +0.3 4,092,712 + Xcc-8004.4275.1 0.48 -1.6 4,092,712 + Xcc-8004.4275.1 0.48 -1.2 4,092,712 + Xcc-8004.4275.1 0.48 -0.1 4,092,712 + Xcc-8004.4275.1 0.48 -0.6 4,092,713 - Xcc-8004.4275.1 0.48 -0.5 4,092,713 - Xcc-8004.4275.1 0.48 -0.6 4,092,713 - Xcc-8004.4275.1 0.48 +1.3 4,092,752 - Xcc-8004.4275.1 0.52 +2.5 4,092,796 + Xcc-8004.4275.1 0.57 -0.5 4,093,798 + -0.6
Or see this region's nucleotide sequence