Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4275.1

Experiment: Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4271.1 and Xcc-8004.4273.1 are separated by 77 nucleotidesXcc-8004.4273.1 and Xcc-8004.4275.1 are separated by 28 nucleotidesXcc-8004.4275.1 and Xcc-8004.4276.1 are separated by 45 nucleotidesXcc-8004.4276.1 and Xcc-8004.4277.1 are separated by 72 nucleotides Xcc-8004.4271.1: Xcc-8004.4271.1 - SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182), at 4,090,963 to 4,091,751 Xcc-8004.4271.1 Xcc-8004.4273.1: Xcc-8004.4273.1 - ApaG protein, at 4,091,829 to 4,092,212 Xcc-8004.4273.1 Xcc-8004.4275.1: Xcc-8004.4275.1 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41), at 4,092,241 to 4,093,221 Xcc-8004.4275.1 Xcc-8004.4276.1: Xcc-8004.4276.1 - Dihydrofolate reductase (EC 1.5.1.3), at 4,093,267 to 4,093,761 Xcc-8004.4276.1 Xcc-8004.4277.1: Xcc-8004.4277.1 - Thymidylate synthase (EC 2.1.1.45), at 4,093,834 to 4,094,628 Xcc-8004.4277.1 Position (kb) 4092 4093 4094Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4091.291 kb on + strand, within Xcc-8004.4271.1at 4091.291 kb on + strand, within Xcc-8004.4271.1at 4091.291 kb on + strand, within Xcc-8004.4271.1at 4091.291 kb on + strand, within Xcc-8004.4271.1at 4091.292 kb on - strand, within Xcc-8004.4271.1at 4091.292 kb on - strand, within Xcc-8004.4271.1at 4091.292 kb on - strand, within Xcc-8004.4271.1at 4091.292 kb on - strand, within Xcc-8004.4271.1at 4091.292 kb on - strand, within Xcc-8004.4271.1at 4091.296 kb on + strand, within Xcc-8004.4271.1at 4091.296 kb on + strand, within Xcc-8004.4271.1at 4091.296 kb on + strand, within Xcc-8004.4271.1at 4091.296 kb on + strand, within Xcc-8004.4271.1at 4091.296 kb on + strand, within Xcc-8004.4271.1at 4091.296 kb on + strand, within Xcc-8004.4271.1at 4091.296 kb on + strand, within Xcc-8004.4271.1at 4091.297 kb on - strand, within Xcc-8004.4271.1at 4091.297 kb on - strand, within Xcc-8004.4271.1at 4091.297 kb on - strand, within Xcc-8004.4271.1at 4091.297 kb on - strand, within Xcc-8004.4271.1at 4091.297 kb on - strand, within Xcc-8004.4271.1at 4091.297 kb on - strand, within Xcc-8004.4271.1at 4091.297 kb on - strand, within Xcc-8004.4271.1at 4091.297 kb on - strand, within Xcc-8004.4271.1at 4091.297 kb on - strand, within Xcc-8004.4271.1at 4091.297 kb on - strand, within Xcc-8004.4271.1at 4091.419 kb on + strand, within Xcc-8004.4271.1at 4091.419 kb on + strand, within Xcc-8004.4271.1at 4091.419 kb on + strand, within Xcc-8004.4271.1at 4091.420 kb on - strand, within Xcc-8004.4271.1at 4091.449 kb on + strand, within Xcc-8004.4271.1at 4091.450 kb on - strand, within Xcc-8004.4271.1at 4091.450 kb on - strand, within Xcc-8004.4271.1at 4091.450 kb on - strand, within Xcc-8004.4271.1at 4091.589 kb on - strand, within Xcc-8004.4271.1at 4091.589 kb on - strand, within Xcc-8004.4271.1at 4091.804 kb on - strandat 4091.804 kb on - strandat 4091.804 kb on - strandat 4091.804 kb on - strandat 4091.817 kb on + strandat 4091.818 kb on - strandat 4091.925 kb on + strand, within Xcc-8004.4273.1at 4091.926 kb on - strand, within Xcc-8004.4273.1at 4092.078 kb on + strand, within Xcc-8004.4273.1at 4092.078 kb on + strand, within Xcc-8004.4273.1at 4092.078 kb on + strand, within Xcc-8004.4273.1at 4092.078 kb on + strand, within Xcc-8004.4273.1at 4092.078 kb on + strand, within Xcc-8004.4273.1at 4092.078 kb on + strand, within Xcc-8004.4273.1at 4092.078 kb on + strand, within Xcc-8004.4273.1at 4092.078 kb on + strand, within Xcc-8004.4273.1at 4092.078 kb on + strand, within Xcc-8004.4273.1at 4092.079 kb on - strand, within Xcc-8004.4273.1at 4092.079 kb on - strand, within Xcc-8004.4273.1at 4092.079 kb on - strand, within Xcc-8004.4273.1at 4092.079 kb on - strand, within Xcc-8004.4273.1at 4092.079 kb on - strand, within Xcc-8004.4273.1at 4092.079 kb on - strand, within Xcc-8004.4273.1at 4092.126 kb on + strand, within Xcc-8004.4273.1at 4092.126 kb on + strand, within Xcc-8004.4273.1at 4092.126 kb on + strand, within Xcc-8004.4273.1at 4092.126 kb on + strand, within Xcc-8004.4273.1at 4092.126 kb on + strand, within Xcc-8004.4273.1at 4092.127 kb on - strand, within Xcc-8004.4273.1at 4092.127 kb on - strand, within Xcc-8004.4273.1at 4092.127 kb on - strand, within Xcc-8004.4273.1at 4092.127 kb on - strand, within Xcc-8004.4273.1at 4092.129 kb on + strand, within Xcc-8004.4273.1at 4092.129 kb on + strand, within Xcc-8004.4273.1at 4092.129 kb on + strand, within Xcc-8004.4273.1at 4092.129 kb on + strand, within Xcc-8004.4273.1at 4092.129 kb on + strand, within Xcc-8004.4273.1at 4092.130 kb on - strand, within Xcc-8004.4273.1at 4092.130 kb on - strand, within Xcc-8004.4273.1at 4092.130 kb on - strand, within Xcc-8004.4273.1at 4092.130 kb on - strand, within Xcc-8004.4273.1at 4092.277 kb on + strandat 4092.277 kb on + strandat 4092.278 kb on - strandat 4092.278 kb on - strandat 4092.278 kb on - strandat 4092.282 kb on + strandat 4092.283 kb on - strandat 4092.419 kb on + strand, within Xcc-8004.4275.1at 4092.419 kb on + strand, within Xcc-8004.4275.1at 4092.420 kb on - strand, within Xcc-8004.4275.1at 4092.420 kb on - strand, within Xcc-8004.4275.1at 4092.420 kb on - strand, within Xcc-8004.4275.1at 4092.503 kb on + strand, within Xcc-8004.4275.1at 4092.504 kb on - strand, within Xcc-8004.4275.1at 4092.504 kb on - strand, within Xcc-8004.4275.1at 4092.712 kb on + strand, within Xcc-8004.4275.1at 4092.712 kb on + strand, within Xcc-8004.4275.1at 4092.712 kb on + strand, within Xcc-8004.4275.1at 4092.712 kb on + strand, within Xcc-8004.4275.1at 4092.712 kb on + strand, within Xcc-8004.4275.1at 4092.712 kb on + strand, within Xcc-8004.4275.1at 4092.712 kb on + strand, within Xcc-8004.4275.1at 4092.713 kb on - strand, within Xcc-8004.4275.1at 4092.713 kb on - strand, within Xcc-8004.4275.1at 4092.713 kb on - strand, within Xcc-8004.4275.1at 4092.752 kb on - strand, within Xcc-8004.4275.1at 4092.796 kb on + strand, within Xcc-8004.4275.1at 4093.798 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
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4,091,291 + Xcc-8004.4271.1 0.42 -0.2
4,091,291 + Xcc-8004.4271.1 0.42 -0.2
4,091,291 + Xcc-8004.4271.1 0.42 -0.5
4,091,291 + Xcc-8004.4271.1 0.42 -1.6
4,091,292 - Xcc-8004.4271.1 0.42 +0.2
4,091,292 - Xcc-8004.4271.1 0.42 -1.1
4,091,292 - Xcc-8004.4271.1 0.42 +0.2
4,091,292 - Xcc-8004.4271.1 0.42 +1.9
4,091,292 - Xcc-8004.4271.1 0.42 +0.9
4,091,296 + Xcc-8004.4271.1 0.42 +0.9
4,091,296 + Xcc-8004.4271.1 0.42 -1.1
4,091,296 + Xcc-8004.4271.1 0.42 +0.2
4,091,296 + Xcc-8004.4271.1 0.42 -0.2
4,091,296 + Xcc-8004.4271.1 0.42 +0.3
4,091,296 + Xcc-8004.4271.1 0.42 -1.9
4,091,296 + Xcc-8004.4271.1 0.42 -1.4
4,091,297 - Xcc-8004.4271.1 0.42 -0.2
4,091,297 - Xcc-8004.4271.1 0.42 +0.9
4,091,297 - Xcc-8004.4271.1 0.42 -0.9
4,091,297 - Xcc-8004.4271.1 0.42 +2.1
4,091,297 - Xcc-8004.4271.1 0.42 +0.2
4,091,297 - Xcc-8004.4271.1 0.42 +0.3
4,091,297 - Xcc-8004.4271.1 0.42 -1.9
4,091,297 - Xcc-8004.4271.1 0.42 -0.6
4,091,297 - Xcc-8004.4271.1 0.42 -1.1
4,091,297 - Xcc-8004.4271.1 0.42 -0.6
4,091,419 + Xcc-8004.4271.1 0.58 +0.7
4,091,419 + Xcc-8004.4271.1 0.58 +0.2
4,091,419 + Xcc-8004.4271.1 0.58 +1.4
4,091,420 - Xcc-8004.4271.1 0.58 -0.8
4,091,449 + Xcc-8004.4271.1 0.62 -0.6
4,091,450 - Xcc-8004.4271.1 0.62 +0.0
4,091,450 - Xcc-8004.4271.1 0.62 -1.7
4,091,450 - Xcc-8004.4271.1 0.62 -0.9
4,091,589 - Xcc-8004.4271.1 0.79 -0.5
4,091,589 - Xcc-8004.4271.1 0.79 -0.6
4,091,804 - -2.0
4,091,804 - -0.8
4,091,804 - -0.6
4,091,804 - -0.5
4,091,817 + -0.4
4,091,818 - -0.1
4,091,925 + Xcc-8004.4273.1 0.25 +0.3
4,091,926 - Xcc-8004.4273.1 0.25 -0.6
4,092,078 + Xcc-8004.4273.1 0.65 -0.2
4,092,078 + Xcc-8004.4273.1 0.65 +1.8
4,092,078 + Xcc-8004.4273.1 0.65 -1.4
4,092,078 + Xcc-8004.4273.1 0.65 -2.3
4,092,078 + Xcc-8004.4273.1 0.65 -2.1
4,092,078 + Xcc-8004.4273.1 0.65 +2.3
4,092,078 + Xcc-8004.4273.1 0.65 +1.4
4,092,078 + Xcc-8004.4273.1 0.65 +1.7
4,092,078 + Xcc-8004.4273.1 0.65 -0.8
4,092,079 - Xcc-8004.4273.1 0.65 +0.1
4,092,079 - Xcc-8004.4273.1 0.65 -1.8
4,092,079 - Xcc-8004.4273.1 0.65 +1.3
4,092,079 - Xcc-8004.4273.1 0.65 +0.3
4,092,079 - Xcc-8004.4273.1 0.65 -1.9
4,092,079 - Xcc-8004.4273.1 0.65 -2.2
4,092,126 + Xcc-8004.4273.1 0.77 +0.4
4,092,126 + Xcc-8004.4273.1 0.77 +0.7
4,092,126 + Xcc-8004.4273.1 0.77 -1.9
4,092,126 + Xcc-8004.4273.1 0.77 -0.4
4,092,126 + Xcc-8004.4273.1 0.77 +0.8
4,092,127 - Xcc-8004.4273.1 0.78 +0.7
4,092,127 - Xcc-8004.4273.1 0.78 +0.1
4,092,127 - Xcc-8004.4273.1 0.78 -0.6
4,092,127 - Xcc-8004.4273.1 0.78 -0.1
4,092,129 + Xcc-8004.4273.1 0.78 -0.6
4,092,129 + Xcc-8004.4273.1 0.78 -2.2
4,092,129 + Xcc-8004.4273.1 0.78 +0.2
4,092,129 + Xcc-8004.4273.1 0.78 +0.6
4,092,129 + Xcc-8004.4273.1 0.78 +0.5
4,092,130 - Xcc-8004.4273.1 0.78 -0.1
4,092,130 - Xcc-8004.4273.1 0.78 -0.1
4,092,130 - Xcc-8004.4273.1 0.78 -0.1
4,092,130 - Xcc-8004.4273.1 0.78 +1.4
4,092,277 + -1.6
4,092,277 + -2.8
4,092,278 - +0.5
4,092,278 - -1.1
4,092,278 - +2.3
4,092,282 + +0.6
4,092,283 - -1.6
4,092,419 + Xcc-8004.4275.1 0.18 -2.9
4,092,419 + Xcc-8004.4275.1 0.18 +0.1
4,092,420 - Xcc-8004.4275.1 0.18 -1.3
4,092,420 - Xcc-8004.4275.1 0.18 -1.9
4,092,420 - Xcc-8004.4275.1 0.18 -2.0
4,092,503 + Xcc-8004.4275.1 0.27 +1.4
4,092,504 - Xcc-8004.4275.1 0.27 -2.9
4,092,504 - Xcc-8004.4275.1 0.27 -1.2
4,092,712 + Xcc-8004.4275.1 0.48 -0.5
4,092,712 + Xcc-8004.4275.1 0.48 +0.9
4,092,712 + Xcc-8004.4275.1 0.48 +0.3
4,092,712 + Xcc-8004.4275.1 0.48 -1.6
4,092,712 + Xcc-8004.4275.1 0.48 -1.2
4,092,712 + Xcc-8004.4275.1 0.48 -0.1
4,092,712 + Xcc-8004.4275.1 0.48 -0.6
4,092,713 - Xcc-8004.4275.1 0.48 -0.5
4,092,713 - Xcc-8004.4275.1 0.48 -0.6
4,092,713 - Xcc-8004.4275.1 0.48 +1.3
4,092,752 - Xcc-8004.4275.1 0.52 +2.5
4,092,796 + Xcc-8004.4275.1 0.57 -0.5
4,093,798 + -0.6

Or see this region's nucleotide sequence