Experiment: Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3531.1 and Xcc-8004.3532.1 are separated by 280 nucleotides Xcc-8004.3532.1 and Xcc-8004.3533.1 are separated by 75 nucleotides
Xcc-8004.3531.1: Xcc-8004.3531.1 - Thiopurine S-methyltransferase (EC 2.1.1.67), at 3,419,414 to 3,420,202
Xcc-8004.3531.1
Xcc-8004.3532.1: Xcc-8004.3532.1 - Bacterioferritin, at 3,420,483 to 3,420,968
Xcc-8004.3532.1
Xcc-8004.3533.1: Xcc-8004.3533.1 - Penicillin acylase II, at 3,421,044 to 3,423,530
Xcc-8004.3533.1
Position (kb) 3420
3421 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3419.667 kb on + strand, within Xcc-8004.3531.1 at 3419.668 kb on - strand, within Xcc-8004.3531.1 at 3419.746 kb on - strand, within Xcc-8004.3531.1 at 3419.955 kb on - strand, within Xcc-8004.3531.1 at 3420.018 kb on - strand, within Xcc-8004.3531.1 at 3420.069 kb on + strand, within Xcc-8004.3531.1 at 3420.392 kb on + strand at 3420.408 kb on - strand at 3420.523 kb on + strand at 3420.523 kb on + strand at 3420.523 kb on + strand at 3420.524 kb on - strand at 3420.524 kb on - strand at 3420.681 kb on + strand, within Xcc-8004.3532.1 at 3420.682 kb on - strand, within Xcc-8004.3532.1 at 3420.682 kb on - strand, within Xcc-8004.3532.1 at 3420.688 kb on + strand, within Xcc-8004.3532.1 at 3420.895 kb on + strand, within Xcc-8004.3532.1 at 3420.896 kb on - strand, within Xcc-8004.3532.1 at 3420.941 kb on - strand at 3421.026 kb on - strand at 3421.191 kb on + strand at 3421.192 kb on - strand at 3421.240 kb on + strand at 3421.240 kb on + strand at 3421.240 kb on + strand at 3421.241 kb on - strand at 3421.338 kb on + strand, within Xcc-8004.3533.1 at 3421.339 kb on - strand, within Xcc-8004.3533.1 at 3421.339 kb on - strand, within Xcc-8004.3533.1 at 3421.339 kb on - strand, within Xcc-8004.3533.1 at 3421.359 kb on + strand, within Xcc-8004.3533.1 at 3421.359 kb on + strand, within Xcc-8004.3533.1 at 3421.360 kb on - strand, within Xcc-8004.3533.1 at 3421.528 kb on - strand, within Xcc-8004.3533.1 at 3421.528 kb on - strand, within Xcc-8004.3533.1 at 3421.528 kb on - strand, within Xcc-8004.3533.1 at 3421.529 kb on + strand, within Xcc-8004.3533.1 at 3421.529 kb on + strand, within Xcc-8004.3533.1 at 3421.530 kb on - strand, within Xcc-8004.3533.1 at 3421.540 kb on + strand, within Xcc-8004.3533.1 at 3421.540 kb on + strand, within Xcc-8004.3533.1 at 3421.541 kb on - strand, within Xcc-8004.3533.1 at 3421.650 kb on + strand, within Xcc-8004.3533.1 at 3421.651 kb on - strand, within Xcc-8004.3533.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x remove 3,419,667 + Xcc-8004.3531.1 0.32 +0.3 3,419,668 - Xcc-8004.3531.1 0.32 +0.6 3,419,746 - Xcc-8004.3531.1 0.42 -1.1 3,419,955 - Xcc-8004.3531.1 0.69 +0.5 3,420,018 - Xcc-8004.3531.1 0.77 +0.2 3,420,069 + Xcc-8004.3531.1 0.83 -0.8 3,420,392 + +0.8 3,420,408 - +0.1 3,420,523 + +0.4 3,420,523 + +0.6 3,420,523 + +0.6 3,420,524 - +0.9 3,420,524 - -0.6 3,420,681 + Xcc-8004.3532.1 0.41 -2.0 3,420,682 - Xcc-8004.3532.1 0.41 -1.2 3,420,682 - Xcc-8004.3532.1 0.41 -0.7 3,420,688 + Xcc-8004.3532.1 0.42 +1.9 3,420,895 + Xcc-8004.3532.1 0.85 -0.1 3,420,896 - Xcc-8004.3532.1 0.85 -1.6 3,420,941 - -2.5 3,421,026 - +0.9 3,421,191 + +1.9 3,421,192 - +0.1 3,421,240 + -2.4 3,421,240 + +0.2 3,421,240 + +1.2 3,421,241 - -0.6 3,421,338 + Xcc-8004.3533.1 0.12 +0.1 3,421,339 - Xcc-8004.3533.1 0.12 +1.4 3,421,339 - Xcc-8004.3533.1 0.12 -1.4 3,421,339 - Xcc-8004.3533.1 0.12 +0.9 3,421,359 + Xcc-8004.3533.1 0.13 -1.2 3,421,359 + Xcc-8004.3533.1 0.13 +0.1 3,421,360 - Xcc-8004.3533.1 0.13 +0.6 3,421,528 - Xcc-8004.3533.1 0.19 -0.9 3,421,528 - Xcc-8004.3533.1 0.19 -1.2 3,421,528 - Xcc-8004.3533.1 0.19 -0.5 3,421,529 + Xcc-8004.3533.1 0.20 +1.4 3,421,529 + Xcc-8004.3533.1 0.20 -0.3 3,421,530 - Xcc-8004.3533.1 0.20 +0.1 3,421,540 + Xcc-8004.3533.1 0.20 +0.4 3,421,540 + Xcc-8004.3533.1 0.20 +1.4 3,421,541 - Xcc-8004.3533.1 0.20 -0.1 3,421,650 + Xcc-8004.3533.1 0.24 +0.5 3,421,651 - Xcc-8004.3533.1 0.24 +0.4
Or see this region's nucleotide sequence