Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3374.1

Experiment: Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.3372.1 and Xcc-8004.3373.1 are separated by 29 nucleotidesXcc-8004.3373.1 and Xcc-8004.3374.1 overlap by 4 nucleotidesXcc-8004.3374.1 and Xcc-8004.3375.1 are separated by 252 nucleotidesXcc-8004.3375.1 and Xcc-8004.3376.1 are separated by 28 nucleotidesXcc-8004.3376.1 and Xcc-8004.3377.1 are separated by 28 nucleotidesXcc-8004.3377.1 and Xcc-8004.3378.1 are separated by 28 nucleotides Xcc-8004.3372.1: Xcc-8004.3372.1 - Beta-glucosidase (EC 3.2.1.21), at 3,268,200 to 3,269,723 Xcc-8004.3372.1 Xcc-8004.3373.1: Xcc-8004.3373.1 - hypothetical protein, at 3,269,753 to 3,270,010 Xcc-8004.3373.1 Xcc-8004.3374.1: Xcc-8004.3374.1 - hypothetical protein, at 3,270,007 to 3,270,231 Xcc-8004.3374.1 Xcc-8004.3375.1: Xcc-8004.3375.1 - hypothetical protein, at 3,270,484 to 3,270,594 Xcc-8004.3375.1 Xcc-8004.3376.1: Xcc-8004.3376.1 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 3,270,623 to 3,270,733 Xcc-8004.3376.1 Xcc-8004.3377.1: Xcc-8004.3377.1 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 3,270,762 to 3,270,872 Xcc-8004.3377.1 Xcc-8004.3378.1: Xcc-8004.3378.1 - hypothetical protein, at 3,270,901 to 3,272,049 Xcc-8004.3378.1 Position (kb) 3270 3271Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3269.032 kb on + strand, within Xcc-8004.3372.1at 3269.032 kb on + strand, within Xcc-8004.3372.1at 3269.033 kb on - strand, within Xcc-8004.3372.1at 3269.033 kb on - strand, within Xcc-8004.3372.1at 3269.033 kb on - strand, within Xcc-8004.3372.1at 3269.089 kb on + strand, within Xcc-8004.3372.1at 3269.089 kb on + strand, within Xcc-8004.3372.1at 3269.089 kb on + strand, within Xcc-8004.3372.1at 3269.090 kb on - strand, within Xcc-8004.3372.1at 3269.090 kb on - strand, within Xcc-8004.3372.1at 3269.090 kb on - strand, within Xcc-8004.3372.1at 3269.090 kb on - strand, within Xcc-8004.3372.1at 3269.090 kb on - strand, within Xcc-8004.3372.1at 3269.090 kb on - strand, within Xcc-8004.3372.1at 3269.397 kb on + strand, within Xcc-8004.3372.1at 3269.398 kb on - strand, within Xcc-8004.3372.1at 3269.398 kb on - strand, within Xcc-8004.3372.1at 3269.423 kb on - strand, within Xcc-8004.3372.1at 3269.423 kb on - strand, within Xcc-8004.3372.1at 3269.476 kb on + strand, within Xcc-8004.3372.1at 3269.476 kb on + strand, within Xcc-8004.3372.1at 3269.477 kb on - strand, within Xcc-8004.3372.1at 3269.477 kb on - strand, within Xcc-8004.3372.1at 3269.477 kb on - strand, within Xcc-8004.3372.1at 3269.477 kb on - strand, within Xcc-8004.3372.1at 3269.646 kb on + strandat 3269.775 kb on - strandat 3269.787 kb on + strand, within Xcc-8004.3373.1at 3269.787 kb on + strand, within Xcc-8004.3373.1at 3269.787 kb on + strand, within Xcc-8004.3373.1at 3269.788 kb on - strand, within Xcc-8004.3373.1at 3269.788 kb on - strand, within Xcc-8004.3373.1at 3269.860 kb on + strand, within Xcc-8004.3373.1at 3269.860 kb on + strand, within Xcc-8004.3373.1at 3269.861 kb on - strand, within Xcc-8004.3373.1at 3269.861 kb on - strand, within Xcc-8004.3373.1at 3269.869 kb on + strand, within Xcc-8004.3373.1at 3269.933 kb on + strand, within Xcc-8004.3373.1at 3269.934 kb on - strand, within Xcc-8004.3373.1at 3269.958 kb on + strand, within Xcc-8004.3373.1at 3270.000 kb on + strandat 3270.063 kb on + strand, within Xcc-8004.3374.1at 3270.092 kb on + strand, within Xcc-8004.3374.1at 3270.093 kb on - strand, within Xcc-8004.3374.1at 3270.093 kb on - strand, within Xcc-8004.3374.1at 3270.155 kb on - strand, within Xcc-8004.3374.1at 3270.285 kb on - strandat 3270.313 kb on + strandat 3270.313 kb on + strandat 3270.314 kb on - strandat 3270.377 kb on + strandat 3270.377 kb on + strandat 3270.403 kb on - strandat 3270.403 kb on - strandat 3270.403 kb on - strandat 3270.403 kb on - strandat 3270.403 kb on - strandat 3270.403 kb on - strandat 3270.425 kb on - strandat 3270.425 kb on - strandat 3270.444 kb on + strandat 3270.545 kb on + strand, within Xcc-8004.3375.1at 3270.545 kb on + strand, within Xcc-8004.3375.1at 3270.545 kb on + strand, within Xcc-8004.3375.1at 3270.545 kb on + strand, within Xcc-8004.3375.1at 3270.546 kb on - strand, within Xcc-8004.3375.1at 3270.684 kb on + strand, within Xcc-8004.3376.1at 3270.684 kb on + strand, within Xcc-8004.3376.1at 3270.684 kb on + strand, within Xcc-8004.3376.1at 3270.684 kb on + strand, within Xcc-8004.3376.1at 3270.684 kb on + strand, within Xcc-8004.3376.1at 3270.684 kb on + strand, within Xcc-8004.3376.1at 3270.823 kb on + strand, within Xcc-8004.3377.1at 3270.962 kb on + strandat 3270.962 kb on + strandat 3270.962 kb on + strandat 3270.963 kb on - strandat 3270.992 kb on + strandat 3271.019 kb on + strand, within Xcc-8004.3378.1at 3271.020 kb on - strand, within Xcc-8004.3378.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
remove
3,269,032 + Xcc-8004.3372.1 0.55 +0.6
3,269,032 + Xcc-8004.3372.1 0.55 +1.7
3,269,033 - Xcc-8004.3372.1 0.55 +0.6
3,269,033 - Xcc-8004.3372.1 0.55 -1.2
3,269,033 - Xcc-8004.3372.1 0.55 +0.1
3,269,089 + Xcc-8004.3372.1 0.58 -0.0
3,269,089 + Xcc-8004.3372.1 0.58 +0.4
3,269,089 + Xcc-8004.3372.1 0.58 +0.8
3,269,090 - Xcc-8004.3372.1 0.58 -2.6
3,269,090 - Xcc-8004.3372.1 0.58 -0.8
3,269,090 - Xcc-8004.3372.1 0.58 -0.7
3,269,090 - Xcc-8004.3372.1 0.58 -1.6
3,269,090 - Xcc-8004.3372.1 0.58 +1.7
3,269,090 - Xcc-8004.3372.1 0.58 +0.6
3,269,397 + Xcc-8004.3372.1 0.79 +3.6
3,269,398 - Xcc-8004.3372.1 0.79 -1.0
3,269,398 - Xcc-8004.3372.1 0.79 +0.6
3,269,423 - Xcc-8004.3372.1 0.80 +0.8
3,269,423 - Xcc-8004.3372.1 0.80 -0.2
3,269,476 + Xcc-8004.3372.1 0.84 -1.3
3,269,476 + Xcc-8004.3372.1 0.84 -1.5
3,269,477 - Xcc-8004.3372.1 0.84 -0.6
3,269,477 - Xcc-8004.3372.1 0.84 -1.4
3,269,477 - Xcc-8004.3372.1 0.84 -0.0
3,269,477 - Xcc-8004.3372.1 0.84 -0.1
3,269,646 + -0.1
3,269,775 - +0.0
3,269,787 + Xcc-8004.3373.1 0.13 +0.1
3,269,787 + Xcc-8004.3373.1 0.13 -2.2
3,269,787 + Xcc-8004.3373.1 0.13 +0.6
3,269,788 - Xcc-8004.3373.1 0.14 -0.3
3,269,788 - Xcc-8004.3373.1 0.14 -0.2
3,269,860 + Xcc-8004.3373.1 0.41 +0.7
3,269,860 + Xcc-8004.3373.1 0.41 +0.4
3,269,861 - Xcc-8004.3373.1 0.42 +1.1
3,269,861 - Xcc-8004.3373.1 0.42 -1.5
3,269,869 + Xcc-8004.3373.1 0.45 -1.8
3,269,933 + Xcc-8004.3373.1 0.70 -1.3
3,269,934 - Xcc-8004.3373.1 0.70 +2.0
3,269,958 + Xcc-8004.3373.1 0.79 +1.0
3,270,000 + -0.3
3,270,063 + Xcc-8004.3374.1 0.25 -1.0
3,270,092 + Xcc-8004.3374.1 0.38 -1.0
3,270,093 - Xcc-8004.3374.1 0.38 -0.3
3,270,093 - Xcc-8004.3374.1 0.38 +1.0
3,270,155 - Xcc-8004.3374.1 0.66 -0.4
3,270,285 - +0.7
3,270,313 + +0.7
3,270,313 + -0.0
3,270,314 - +0.8
3,270,377 + -0.4
3,270,377 + +0.6
3,270,403 - +0.4
3,270,403 - +1.2
3,270,403 - +0.7
3,270,403 - +1.0
3,270,403 - +0.5
3,270,403 - +0.7
3,270,425 - -0.0
3,270,425 - +0.1
3,270,444 + -0.2
3,270,545 + Xcc-8004.3375.1 0.55 -0.1
3,270,545 + Xcc-8004.3375.1 0.55 -0.3
3,270,545 + Xcc-8004.3375.1 0.55 +0.6
3,270,545 + Xcc-8004.3375.1 0.55 +1.1
3,270,546 - Xcc-8004.3375.1 0.56 +0.2
3,270,684 + Xcc-8004.3376.1 0.55 +0.5
3,270,684 + Xcc-8004.3376.1 0.55 +0.1
3,270,684 + Xcc-8004.3376.1 0.55 +1.2
3,270,684 + Xcc-8004.3376.1 0.55 +1.8
3,270,684 + Xcc-8004.3376.1 0.55 +2.3
3,270,684 + Xcc-8004.3376.1 0.55 +2.0
3,270,823 + Xcc-8004.3377.1 0.55 -0.3
3,270,962 + +0.5
3,270,962 + -0.9
3,270,962 + +3.0
3,270,963 - -0.5
3,270,992 + +0.3
3,271,019 + Xcc-8004.3378.1 0.10 +0.2
3,271,020 - Xcc-8004.3378.1 0.10 +0.5

Or see this region's nucleotide sequence