Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2497.1

Experiment: Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.2494.1 and Xcc-8004.2495.1 are separated by 136 nucleotidesXcc-8004.2495.1 and Xcc-8004.2496.1 are separated by 85 nucleotidesXcc-8004.2496.1 and Xcc-8004.2497.1 are separated by 32 nucleotidesXcc-8004.2497.1 and Xcc-8004.2498.1 are separated by 137 nucleotides Xcc-8004.2494.1: Xcc-8004.2494.1 - Mobile element protein, at 2,422,070 to 2,422,750 Xcc-8004.2494.1 Xcc-8004.2495.1: Xcc-8004.2495.1 - hypothetical protein, at 2,422,887 to 2,423,021 Xcc-8004.2495.1 Xcc-8004.2496.1: Xcc-8004.2496.1 - Mobile element protein, at 2,423,107 to 2,423,379 Xcc-8004.2496.1 Xcc-8004.2497.1: Xcc-8004.2497.1 - Mobile element protein, at 2,423,412 to 2,424,245 Xcc-8004.2497.1 Xcc-8004.2498.1: Xcc-8004.2498.1 - Mobile element protein, at 2,424,383 to 2,425,363 Xcc-8004.2498.1 Position (kb) 2423 2424 2425Strain fitness (log2 ratio) -1 0 1at 2422.919 kb on + strand, within Xcc-8004.2495.1at 2422.919 kb on + strand, within Xcc-8004.2495.1at 2422.985 kb on + strand, within Xcc-8004.2495.1at 2423.002 kb on - strand, within Xcc-8004.2495.1at 2423.078 kb on - strandat 2423.080 kb on - strandat 2423.860 kb on + strand, within Xcc-8004.2497.1at 2424.237 kb on + strandat 2424.237 kb on + strandat 2424.243 kb on + strandat 2424.243 kb on + strandat 2424.347 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
remove
2,422,919 + Xcc-8004.2495.1 0.24 +0.8
2,422,919 + Xcc-8004.2495.1 0.24 +1.0
2,422,985 + Xcc-8004.2495.1 0.73 -0.6
2,423,002 - Xcc-8004.2495.1 0.85 +1.0
2,423,078 - +0.8
2,423,080 - +1.0
2,423,860 + Xcc-8004.2497.1 0.54 -0.6
2,424,237 + -0.3
2,424,237 + +1.0
2,424,243 + +0.1
2,424,243 + -0.0
2,424,347 - -0.1

Or see this region's nucleotide sequence