Experiment: Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.2357.1 and Xcc-8004.2358.1 overlap by 62 nucleotides Xcc-8004.2358.1 and Xcc-8004.2360.1 are separated by 366 nucleotides Xcc-8004.2360.1 and Xcc-8004.2361.1 overlap by 4 nucleotides
Xcc-8004.2357.1: Xcc-8004.2357.1 - Segregation and condensation protein B, at 2,300,826 to 2,302,031
Xcc-8004.2357.1
Xcc-8004.2358.1: Xcc-8004.2358.1 - Segregation and condensation protein A, at 2,301,970 to 2,302,875
Xcc-8004.2358.1
Xcc-8004.2360.1: Xcc-8004.2360.1 - YciL protein, at 2,303,242 to 2,303,541
Xcc-8004.2360.1
Xcc-8004.2361.1: Xcc-8004.2361.1 - Cell division protein BolA, at 2,303,538 to 2,303,807
Xcc-8004.2361.1
Position (kb) 2301
2302
2303 Strain fitness (log2 ratio) -2
-1
0
1
2 at 2301.330 kb on - strand, within Xcc-8004.2357.1 at 2301.330 kb on - strand, within Xcc-8004.2357.1 at 2301.330 kb on - strand, within Xcc-8004.2357.1 at 2301.488 kb on - strand, within Xcc-8004.2357.1 at 2301.488 kb on - strand, within Xcc-8004.2357.1 at 2301.691 kb on + strand, within Xcc-8004.2357.1 at 2301.692 kb on - strand, within Xcc-8004.2357.1 at 2301.692 kb on - strand, within Xcc-8004.2357.1 at 2301.692 kb on - strand, within Xcc-8004.2357.1 at 2302.035 kb on + strand at 2302.036 kb on - strand at 2302.036 kb on - strand at 2302.036 kb on - strand at 2302.062 kb on - strand, within Xcc-8004.2358.1 at 2302.062 kb on - strand, within Xcc-8004.2358.1 at 2302.062 kb on - strand, within Xcc-8004.2358.1 at 2302.062 kb on - strand, within Xcc-8004.2358.1 at 2302.062 kb on - strand, within Xcc-8004.2358.1 at 2302.191 kb on - strand, within Xcc-8004.2358.1 at 2302.191 kb on - strand, within Xcc-8004.2358.1 at 2302.305 kb on - strand, within Xcc-8004.2358.1 at 2302.305 kb on - strand, within Xcc-8004.2358.1 at 2302.305 kb on - strand, within Xcc-8004.2358.1 at 2302.305 kb on - strand, within Xcc-8004.2358.1 at 2302.452 kb on - strand, within Xcc-8004.2358.1 at 2302.452 kb on - strand, within Xcc-8004.2358.1 at 2302.452 kb on - strand, within Xcc-8004.2358.1 at 2302.452 kb on - strand, within Xcc-8004.2358.1 at 2302.572 kb on - strand, within Xcc-8004.2358.1 at 2302.572 kb on - strand, within Xcc-8004.2358.1 at 2302.572 kb on - strand, within Xcc-8004.2358.1 at 2302.617 kb on - strand, within Xcc-8004.2358.1 at 2302.617 kb on - strand, within Xcc-8004.2358.1 at 2302.617 kb on - strand, within Xcc-8004.2358.1 at 2302.617 kb on - strand, within Xcc-8004.2358.1 at 2302.617 kb on - strand, within Xcc-8004.2358.1 at 2302.617 kb on - strand, within Xcc-8004.2358.1 at 2302.617 kb on - strand, within Xcc-8004.2358.1 at 2302.625 kb on + strand, within Xcc-8004.2358.1 at 2302.626 kb on - strand, within Xcc-8004.2358.1 at 2302.626 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.755 kb on - strand, within Xcc-8004.2358.1 at 2302.946 kb on + strand at 2302.947 kb on - strand at 2302.947 kb on - strand at 2302.947 kb on - strand at 2302.947 kb on - strand at 2302.947 kb on - strand at 2302.996 kb on - strand at 2302.996 kb on - strand at 2302.996 kb on - strand at 2302.996 kb on - strand at 2302.996 kb on - strand at 2302.996 kb on - strand at 2302.996 kb on - strand at 2302.996 kb on - strand at 2302.996 kb on - strand at 2303.061 kb on - strand at 2303.061 kb on - strand at 2303.162 kb on - strand at 2303.162 kb on - strand at 2303.162 kb on - strand at 2303.162 kb on - strand at 2303.162 kb on - strand at 2303.162 kb on - strand at 2303.162 kb on - strand at 2303.248 kb on + strand at 2303.248 kb on + strand at 2303.248 kb on + strand at 2303.248 kb on + strand at 2303.248 kb on + strand at 2303.248 kb on + strand at 2303.249 kb on - strand at 2303.249 kb on - strand at 2303.249 kb on - strand at 2303.249 kb on - strand at 2303.249 kb on - strand at 2303.249 kb on - strand at 2303.249 kb on - strand at 2303.252 kb on + strand at 2303.252 kb on + strand at 2303.252 kb on + strand at 2303.252 kb on + strand at 2303.252 kb on + strand at 2303.252 kb on + strand at 2303.252 kb on + strand at 2303.252 kb on + strand at 2303.252 kb on + strand at 2303.253 kb on - strand at 2303.253 kb on - strand at 2303.253 kb on - strand at 2303.253 kb on - strand at 2303.253 kb on - strand at 2303.253 kb on - strand at 2303.253 kb on - strand at 2303.253 kb on - strand at 2303.263 kb on + strand at 2303.263 kb on + strand at 2303.263 kb on + strand at 2303.263 kb on + strand at 2303.263 kb on + strand at 2303.263 kb on + strand at 2303.263 kb on + strand at 2303.263 kb on + strand at 2303.264 kb on - strand at 2303.264 kb on - strand at 2303.264 kb on - strand at 2303.264 kb on - strand at 2303.264 kb on - strand at 2303.264 kb on - strand at 2303.264 kb on - strand at 2303.264 kb on - strand at 2303.410 kb on - strand, within Xcc-8004.2360.1 at 2303.410 kb on - strand, within Xcc-8004.2360.1 at 2303.410 kb on - strand, within Xcc-8004.2360.1 at 2303.479 kb on + strand, within Xcc-8004.2360.1 at 2303.479 kb on + strand, within Xcc-8004.2360.1 at 2303.479 kb on + strand, within Xcc-8004.2360.1 at 2303.479 kb on + strand, within Xcc-8004.2360.1 at 2303.479 kb on + strand, within Xcc-8004.2360.1 at 2303.480 kb on - strand, within Xcc-8004.2360.1 at 2303.480 kb on - strand, within Xcc-8004.2360.1 at 2303.480 kb on - strand, within Xcc-8004.2360.1 at 2303.480 kb on - strand, within Xcc-8004.2360.1 at 2303.480 kb on - strand, within Xcc-8004.2360.1 at 2303.480 kb on - strand, within Xcc-8004.2360.1 at 2303.480 kb on - strand, within Xcc-8004.2360.1 at 2303.480 kb on - strand, within Xcc-8004.2360.1 at 2303.480 kb on - strand, within Xcc-8004.2360.1 at 2303.480 kb on - strand, within Xcc-8004.2360.1 at 2303.480 kb on - strand, within Xcc-8004.2360.1 at 2303.480 kb on - strand, within Xcc-8004.2360.1 at 2303.480 kb on - strand, within Xcc-8004.2360.1 at 2303.480 kb on - strand, within Xcc-8004.2360.1 at 2303.480 kb on - strand, within Xcc-8004.2360.1 at 2303.497 kb on + strand, within Xcc-8004.2360.1 at 2303.497 kb on + strand, within Xcc-8004.2360.1 at 2303.497 kb on + strand, within Xcc-8004.2360.1 at 2303.497 kb on + strand, within Xcc-8004.2360.1 at 2303.497 kb on + strand, within Xcc-8004.2360.1 at 2303.497 kb on + strand, within Xcc-8004.2360.1 at 2303.497 kb on + strand, within Xcc-8004.2360.1 at 2303.497 kb on + strand, within Xcc-8004.2360.1 at 2303.497 kb on + strand, within Xcc-8004.2360.1 at 2303.497 kb on + strand, within Xcc-8004.2360.1 at 2303.497 kb on + strand, within Xcc-8004.2360.1 at 2303.497 kb on + strand, within Xcc-8004.2360.1 at 2303.497 kb on + strand, within Xcc-8004.2360.1 at 2303.497 kb on + strand, within Xcc-8004.2360.1 at 2303.497 kb on + strand, within Xcc-8004.2360.1 at 2303.497 kb on + strand, within Xcc-8004.2360.1 at 2303.498 kb on - strand, within Xcc-8004.2360.1 at 2303.498 kb on - strand, within Xcc-8004.2360.1 at 2303.498 kb on - strand, within Xcc-8004.2360.1 at 2303.498 kb on - strand, within Xcc-8004.2360.1 at 2303.498 kb on - strand, within Xcc-8004.2360.1 at 2303.498 kb on - strand, within Xcc-8004.2360.1 at 2303.498 kb on - strand, within Xcc-8004.2360.1 at 2303.498 kb on - strand, within Xcc-8004.2360.1 at 2303.498 kb on - strand, within Xcc-8004.2360.1 at 2303.498 kb on - strand, within Xcc-8004.2360.1 at 2303.498 kb on - strand, within Xcc-8004.2360.1 at 2303.498 kb on - strand, within Xcc-8004.2360.1 at 2303.498 kb on - strand, within Xcc-8004.2360.1 at 2303.498 kb on - strand, within Xcc-8004.2360.1 at 2303.727 kb on + strand, within Xcc-8004.2361.1 at 2303.727 kb on + strand, within Xcc-8004.2361.1 at 2303.727 kb on + strand, within Xcc-8004.2361.1 at 2303.727 kb on + strand, within Xcc-8004.2361.1 at 2303.727 kb on + strand, within Xcc-8004.2361.1 at 2303.728 kb on - strand, within Xcc-8004.2361.1 at 2303.728 kb on - strand, within Xcc-8004.2361.1 at 2303.728 kb on - strand, within Xcc-8004.2361.1 at 2303.728 kb on - strand, within Xcc-8004.2361.1 at 2303.806 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x remove 2,301,330 - Xcc-8004.2357.1 0.42 -1.5 2,301,330 - Xcc-8004.2357.1 0.42 +0.2 2,301,330 - Xcc-8004.2357.1 0.42 +0.7 2,301,488 - Xcc-8004.2357.1 0.55 +0.4 2,301,488 - Xcc-8004.2357.1 0.55 -0.6 2,301,691 + Xcc-8004.2357.1 0.72 +2.6 2,301,692 - Xcc-8004.2357.1 0.72 +1.0 2,301,692 - Xcc-8004.2357.1 0.72 +0.6 2,301,692 - Xcc-8004.2357.1 0.72 -1.3 2,302,035 + -0.6 2,302,036 - +0.2 2,302,036 - +1.2 2,302,036 - -1.8 2,302,062 - Xcc-8004.2358.1 0.10 -1.6 2,302,062 - Xcc-8004.2358.1 0.10 +0.7 2,302,062 - Xcc-8004.2358.1 0.10 -0.9 2,302,062 - Xcc-8004.2358.1 0.10 +1.4 2,302,062 - Xcc-8004.2358.1 0.10 +0.1 2,302,191 - Xcc-8004.2358.1 0.24 -2.2 2,302,191 - Xcc-8004.2358.1 0.24 -0.6 2,302,305 - Xcc-8004.2358.1 0.37 -1.3 2,302,305 - Xcc-8004.2358.1 0.37 +1.0 2,302,305 - Xcc-8004.2358.1 0.37 -1.8 2,302,305 - Xcc-8004.2358.1 0.37 -0.5 2,302,452 - Xcc-8004.2358.1 0.53 -0.5 2,302,452 - Xcc-8004.2358.1 0.53 -1.3 2,302,452 - Xcc-8004.2358.1 0.53 -0.6 2,302,452 - Xcc-8004.2358.1 0.53 -1.6 2,302,572 - Xcc-8004.2358.1 0.66 -0.6 2,302,572 - Xcc-8004.2358.1 0.66 -1.6 2,302,572 - Xcc-8004.2358.1 0.66 -1.6 2,302,617 - Xcc-8004.2358.1 0.71 -0.6 2,302,617 - Xcc-8004.2358.1 0.71 -0.0 2,302,617 - Xcc-8004.2358.1 0.71 -0.8 2,302,617 - Xcc-8004.2358.1 0.71 +0.0 2,302,617 - Xcc-8004.2358.1 0.71 -1.6 2,302,617 - Xcc-8004.2358.1 0.71 +0.7 2,302,617 - Xcc-8004.2358.1 0.71 -0.6 2,302,625 + Xcc-8004.2358.1 0.72 -0.7 2,302,626 - Xcc-8004.2358.1 0.72 -1.6 2,302,626 - Xcc-8004.2358.1 0.72 +1.4 2,302,755 - Xcc-8004.2358.1 0.87 -0.6 2,302,755 - Xcc-8004.2358.1 0.87 +1.0 2,302,755 - Xcc-8004.2358.1 0.87 +1.0 2,302,755 - Xcc-8004.2358.1 0.87 -0.2 2,302,755 - Xcc-8004.2358.1 0.87 +1.0 2,302,755 - Xcc-8004.2358.1 0.87 -0.3 2,302,755 - Xcc-8004.2358.1 0.87 -0.4 2,302,755 - Xcc-8004.2358.1 0.87 -1.0 2,302,755 - Xcc-8004.2358.1 0.87 -0.9 2,302,755 - Xcc-8004.2358.1 0.87 -1.8 2,302,755 - Xcc-8004.2358.1 0.87 +0.4 2,302,755 - Xcc-8004.2358.1 0.87 -0.8 2,302,755 - Xcc-8004.2358.1 0.87 -0.6 2,302,755 - Xcc-8004.2358.1 0.87 -1.6 2,302,755 - Xcc-8004.2358.1 0.87 -0.6 2,302,755 - Xcc-8004.2358.1 0.87 +1.8 2,302,755 - Xcc-8004.2358.1 0.87 +0.5 2,302,755 - Xcc-8004.2358.1 0.87 -1.1 2,302,755 - Xcc-8004.2358.1 0.87 -0.8 2,302,755 - Xcc-8004.2358.1 0.87 +0.6 2,302,946 + -0.6 2,302,947 - -2.2 2,302,947 - +0.1 2,302,947 - -0.5 2,302,947 - +0.2 2,302,947 - +1.3 2,302,996 - +1.0 2,302,996 - -1.3 2,302,996 - +0.4 2,302,996 - +1.3 2,302,996 - +0.7 2,302,996 - -0.2 2,302,996 - +0.1 2,302,996 - +0.4 2,302,996 - +0.5 2,303,061 - +0.3 2,303,061 - -1.3 2,303,162 - +0.2 2,303,162 - +0.2 2,303,162 - -1.6 2,303,162 - +0.6 2,303,162 - +0.8 2,303,162 - +1.4 2,303,162 - +0.2 2,303,248 + +0.4 2,303,248 + -0.7 2,303,248 + -2.0 2,303,248 + -0.3 2,303,248 + -0.1 2,303,248 + +0.2 2,303,249 - +1.3 2,303,249 - -2.4 2,303,249 - +2.0 2,303,249 - +0.4 2,303,249 - -0.7 2,303,249 - -0.5 2,303,249 - +1.8 2,303,252 + +0.4 2,303,252 + -0.2 2,303,252 + -0.0 2,303,252 + -0.8 2,303,252 + +0.4 2,303,252 + +0.1 2,303,252 + -0.7 2,303,252 + +0.0 2,303,252 + +0.4 2,303,253 - +0.0 2,303,253 - -0.5 2,303,253 - +0.9 2,303,253 - -1.7 2,303,253 - +0.0 2,303,253 - +1.2 2,303,253 - -0.6 2,303,253 - -0.6 2,303,263 + -0.1 2,303,263 + +0.8 2,303,263 + +0.8 2,303,263 + +1.0 2,303,263 + +1.0 2,303,263 + +0.5 2,303,263 + -0.9 2,303,263 + +0.8 2,303,264 - -0.8 2,303,264 - -0.8 2,303,264 - +1.0 2,303,264 - -1.7 2,303,264 - -0.6 2,303,264 - -0.4 2,303,264 - +0.1 2,303,264 - +0.4 2,303,410 - Xcc-8004.2360.1 0.56 +0.7 2,303,410 - Xcc-8004.2360.1 0.56 -0.0 2,303,410 - Xcc-8004.2360.1 0.56 +0.7 2,303,479 + Xcc-8004.2360.1 0.79 +0.6 2,303,479 + Xcc-8004.2360.1 0.79 -0.8 2,303,479 + Xcc-8004.2360.1 0.79 +0.7 2,303,479 + Xcc-8004.2360.1 0.79 -0.0 2,303,479 + Xcc-8004.2360.1 0.79 +1.0 2,303,480 - Xcc-8004.2360.1 0.79 +0.8 2,303,480 - Xcc-8004.2360.1 0.79 -0.0 2,303,480 - Xcc-8004.2360.1 0.79 +2.3 2,303,480 - Xcc-8004.2360.1 0.79 +0.6 2,303,480 - Xcc-8004.2360.1 0.79 -0.3 2,303,480 - Xcc-8004.2360.1 0.79 -0.0 2,303,480 - Xcc-8004.2360.1 0.79 +0.6 2,303,480 - Xcc-8004.2360.1 0.79 +1.0 2,303,480 - Xcc-8004.2360.1 0.79 +0.7 2,303,480 - Xcc-8004.2360.1 0.79 +0.5 2,303,480 - Xcc-8004.2360.1 0.79 +1.6 2,303,480 - Xcc-8004.2360.1 0.79 +0.2 2,303,480 - Xcc-8004.2360.1 0.79 +0.6 2,303,480 - Xcc-8004.2360.1 0.79 +0.2 2,303,480 - Xcc-8004.2360.1 0.79 -1.8 2,303,497 + Xcc-8004.2360.1 0.85 +1.3 2,303,497 + Xcc-8004.2360.1 0.85 +0.2 2,303,497 + Xcc-8004.2360.1 0.85 +2.0 2,303,497 + Xcc-8004.2360.1 0.85 +1.0 2,303,497 + Xcc-8004.2360.1 0.85 +0.4 2,303,497 + Xcc-8004.2360.1 0.85 +0.2 2,303,497 + Xcc-8004.2360.1 0.85 -0.2 2,303,497 + Xcc-8004.2360.1 0.85 -1.1 2,303,497 + Xcc-8004.2360.1 0.85 +0.0 2,303,497 + Xcc-8004.2360.1 0.85 -0.1 2,303,497 + Xcc-8004.2360.1 0.85 +0.5 2,303,497 + Xcc-8004.2360.1 0.85 +0.1 2,303,497 + Xcc-8004.2360.1 0.85 -0.1 2,303,497 + Xcc-8004.2360.1 0.85 +0.6 2,303,497 + Xcc-8004.2360.1 0.85 +1.2 2,303,497 + Xcc-8004.2360.1 0.85 -0.8 2,303,498 - Xcc-8004.2360.1 0.85 +0.1 2,303,498 - Xcc-8004.2360.1 0.85 +0.1 2,303,498 - Xcc-8004.2360.1 0.85 +1.0 2,303,498 - Xcc-8004.2360.1 0.85 -0.5 2,303,498 - Xcc-8004.2360.1 0.85 -1.1 2,303,498 - Xcc-8004.2360.1 0.85 -0.5 2,303,498 - Xcc-8004.2360.1 0.85 +0.7 2,303,498 - Xcc-8004.2360.1 0.85 -1.2 2,303,498 - Xcc-8004.2360.1 0.85 -0.9 2,303,498 - Xcc-8004.2360.1 0.85 -0.3 2,303,498 - Xcc-8004.2360.1 0.85 -0.8 2,303,498 - Xcc-8004.2360.1 0.85 -0.0 2,303,498 - Xcc-8004.2360.1 0.85 -0.4 2,303,498 - Xcc-8004.2360.1 0.85 -0.9 2,303,727 + Xcc-8004.2361.1 0.70 -0.4 2,303,727 + Xcc-8004.2361.1 0.70 -0.9 2,303,727 + Xcc-8004.2361.1 0.70 -0.3 2,303,727 + Xcc-8004.2361.1 0.70 -2.4 2,303,727 + Xcc-8004.2361.1 0.70 +1.0 2,303,728 - Xcc-8004.2361.1 0.70 +0.7 2,303,728 - Xcc-8004.2361.1 0.70 +0.1 2,303,728 - Xcc-8004.2361.1 0.70 -1.3 2,303,728 - Xcc-8004.2361.1 0.70 -1.6 2,303,806 - +0.7
Or see this region's nucleotide sequence