Experiment: Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.142.1 and Xcc-8004.143.1 are separated by 95 nucleotides Xcc-8004.143.1 and Xcc-8004.144.1 are separated by 12 nucleotides Xcc-8004.144.1 and Xcc-8004.145.1 are separated by 78 nucleotides
Xcc-8004.142.1: Xcc-8004.142.1 - L-lactate dehydrogenase (EC 1.1.2.3), at 130,905 to 132,065
Xcc-8004.142.1
Xcc-8004.143.1: Xcc-8004.143.1 - hypothetical protein, at 132,161 to 132,337
Xcc-8004.143.1
Xcc-8004.144.1: Xcc-8004.144.1 - Putative protein-S-isoprenylcysteine methyltransferase, at 132,350 to 132,994
Xcc-8004.144.1
Xcc-8004.145.1: Xcc-8004.145.1 - two-component system sensor protein, at 133,073 to 134,302
Xcc-8004.145.1
Position (kb) 132
133 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 131.407 kb on + strand, within Xcc-8004.142.1 at 131.407 kb on + strand, within Xcc-8004.142.1 at 131.407 kb on + strand, within Xcc-8004.142.1 at 131.407 kb on + strand, within Xcc-8004.142.1 at 131.407 kb on + strand, within Xcc-8004.142.1 at 131.407 kb on + strand, within Xcc-8004.142.1 at 131.408 kb on - strand, within Xcc-8004.142.1 at 131.408 kb on - strand, within Xcc-8004.142.1 at 131.408 kb on - strand, within Xcc-8004.142.1 at 131.408 kb on - strand, within Xcc-8004.142.1 at 131.408 kb on - strand, within Xcc-8004.142.1 at 131.408 kb on - strand, within Xcc-8004.142.1 at 131.408 kb on - strand, within Xcc-8004.142.1 at 131.408 kb on - strand, within Xcc-8004.142.1 at 131.408 kb on - strand, within Xcc-8004.142.1 at 131.408 kb on - strand, within Xcc-8004.142.1 at 131.408 kb on - strand, within Xcc-8004.142.1 at 131.437 kb on + strand, within Xcc-8004.142.1 at 131.437 kb on + strand, within Xcc-8004.142.1 at 131.540 kb on + strand, within Xcc-8004.142.1 at 131.541 kb on - strand, within Xcc-8004.142.1 at 131.680 kb on + strand, within Xcc-8004.142.1 at 131.680 kb on + strand, within Xcc-8004.142.1 at 131.680 kb on + strand, within Xcc-8004.142.1 at 131.680 kb on + strand, within Xcc-8004.142.1 at 131.680 kb on + strand, within Xcc-8004.142.1 at 131.680 kb on + strand, within Xcc-8004.142.1 at 131.680 kb on + strand, within Xcc-8004.142.1 at 131.680 kb on + strand, within Xcc-8004.142.1 at 131.680 kb on + strand, within Xcc-8004.142.1 at 131.680 kb on + strand, within Xcc-8004.142.1 at 131.681 kb on - strand, within Xcc-8004.142.1 at 131.681 kb on - strand, within Xcc-8004.142.1 at 131.681 kb on - strand, within Xcc-8004.142.1 at 131.681 kb on - strand, within Xcc-8004.142.1 at 131.681 kb on - strand, within Xcc-8004.142.1 at 131.681 kb on - strand, within Xcc-8004.142.1 at 131.681 kb on - strand, within Xcc-8004.142.1 at 131.681 kb on - strand, within Xcc-8004.142.1 at 131.681 kb on - strand, within Xcc-8004.142.1 at 131.681 kb on - strand, within Xcc-8004.142.1 at 131.681 kb on - strand, within Xcc-8004.142.1 at 131.815 kb on + strand, within Xcc-8004.142.1 at 131.815 kb on + strand, within Xcc-8004.142.1 at 131.815 kb on + strand, within Xcc-8004.142.1 at 131.815 kb on + strand, within Xcc-8004.142.1 at 131.815 kb on + strand, within Xcc-8004.142.1 at 131.815 kb on + strand, within Xcc-8004.142.1 at 131.815 kb on + strand, within Xcc-8004.142.1 at 131.815 kb on + strand, within Xcc-8004.142.1 at 131.815 kb on + strand, within Xcc-8004.142.1 at 131.815 kb on + strand, within Xcc-8004.142.1 at 131.815 kb on + strand, within Xcc-8004.142.1 at 131.815 kb on + strand, within Xcc-8004.142.1 at 131.815 kb on + strand, within Xcc-8004.142.1 at 131.816 kb on - strand, within Xcc-8004.142.1 at 131.816 kb on - strand, within Xcc-8004.142.1 at 131.816 kb on - strand, within Xcc-8004.142.1 at 131.816 kb on - strand, within Xcc-8004.142.1 at 131.816 kb on - strand, within Xcc-8004.142.1 at 131.816 kb on - strand, within Xcc-8004.142.1 at 131.816 kb on - strand, within Xcc-8004.142.1 at 131.816 kb on - strand, within Xcc-8004.142.1 at 131.816 kb on - strand, within Xcc-8004.142.1 at 131.816 kb on - strand, within Xcc-8004.142.1 at 131.903 kb on + strand, within Xcc-8004.142.1 at 131.903 kb on + strand, within Xcc-8004.142.1 at 131.903 kb on + strand, within Xcc-8004.142.1 at 131.903 kb on + strand, within Xcc-8004.142.1 at 131.903 kb on + strand, within Xcc-8004.142.1 at 131.903 kb on + strand, within Xcc-8004.142.1 at 131.904 kb on - strand, within Xcc-8004.142.1 at 131.904 kb on - strand, within Xcc-8004.142.1 at 131.904 kb on - strand, within Xcc-8004.142.1 at 131.904 kb on - strand, within Xcc-8004.142.1 at 131.904 kb on - strand, within Xcc-8004.142.1 at 131.904 kb on - strand, within Xcc-8004.142.1 at 131.904 kb on - strand, within Xcc-8004.142.1 at 131.977 kb on + strand at 131.977 kb on + strand at 131.978 kb on - strand at 131.978 kb on - strand at 131.995 kb on + strand at 131.995 kb on + strand at 131.995 kb on + strand at 131.995 kb on + strand at 131.995 kb on + strand at 131.995 kb on + strand at 131.995 kb on + strand at 131.995 kb on + strand at 131.996 kb on - strand at 131.996 kb on - strand at 131.996 kb on - strand at 131.996 kb on - strand at 131.996 kb on - strand at 132.101 kb on + strand at 132.101 kb on + strand at 132.101 kb on + strand at 132.101 kb on + strand at 132.101 kb on + strand at 132.102 kb on - strand at 132.102 kb on - strand at 132.102 kb on - strand at 132.102 kb on - strand at 132.154 kb on + strand at 132.154 kb on + strand at 132.155 kb on - strand at 132.155 kb on - strand at 132.155 kb on - strand at 132.155 kb on - strand at 132.225 kb on - strand, within Xcc-8004.143.1 at 132.225 kb on - strand, within Xcc-8004.143.1 at 132.256 kb on + strand, within Xcc-8004.143.1 at 132.256 kb on + strand, within Xcc-8004.143.1 at 132.256 kb on + strand, within Xcc-8004.143.1 at 132.256 kb on + strand, within Xcc-8004.143.1 at 132.257 kb on - strand, within Xcc-8004.143.1 at 132.257 kb on - strand, within Xcc-8004.143.1 at 132.314 kb on - strand, within Xcc-8004.143.1 at 132.390 kb on + strand at 132.391 kb on - strand at 132.391 kb on - strand at 132.400 kb on - strand at 132.526 kb on - strand, within Xcc-8004.144.1 at 132.549 kb on + strand, within Xcc-8004.144.1 at 132.550 kb on - strand, within Xcc-8004.144.1 at 132.867 kb on + strand, within Xcc-8004.144.1 at 132.867 kb on + strand, within Xcc-8004.144.1 at 132.868 kb on - strand, within Xcc-8004.144.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x remove 131,407 + Xcc-8004.142.1 0.43 -0.4 131,407 + Xcc-8004.142.1 0.43 -0.9 131,407 + Xcc-8004.142.1 0.43 -0.5 131,407 + Xcc-8004.142.1 0.43 +0.7 131,407 + Xcc-8004.142.1 0.43 -0.4 131,407 + Xcc-8004.142.1 0.43 +0.8 131,408 - Xcc-8004.142.1 0.43 -0.3 131,408 - Xcc-8004.142.1 0.43 +0.2 131,408 - Xcc-8004.142.1 0.43 -0.5 131,408 - Xcc-8004.142.1 0.43 -0.3 131,408 - Xcc-8004.142.1 0.43 +1.1 131,408 - Xcc-8004.142.1 0.43 +1.4 131,408 - Xcc-8004.142.1 0.43 +0.4 131,408 - Xcc-8004.142.1 0.43 +0.1 131,408 - Xcc-8004.142.1 0.43 +0.7 131,408 - Xcc-8004.142.1 0.43 +0.3 131,408 - Xcc-8004.142.1 0.43 +2.0 131,437 + Xcc-8004.142.1 0.46 -0.6 131,437 + Xcc-8004.142.1 0.46 -0.6 131,540 + Xcc-8004.142.1 0.55 -0.2 131,541 - Xcc-8004.142.1 0.55 -0.9 131,680 + Xcc-8004.142.1 0.67 +0.2 131,680 + Xcc-8004.142.1 0.67 +0.8 131,680 + Xcc-8004.142.1 0.67 -1.0 131,680 + Xcc-8004.142.1 0.67 +1.2 131,680 + Xcc-8004.142.1 0.67 -1.1 131,680 + Xcc-8004.142.1 0.67 +0.5 131,680 + Xcc-8004.142.1 0.67 +0.1 131,680 + Xcc-8004.142.1 0.67 +0.5 131,680 + Xcc-8004.142.1 0.67 -0.9 131,680 + Xcc-8004.142.1 0.67 -0.4 131,681 - Xcc-8004.142.1 0.67 +0.8 131,681 - Xcc-8004.142.1 0.67 -2.0 131,681 - Xcc-8004.142.1 0.67 -1.8 131,681 - Xcc-8004.142.1 0.67 +2.8 131,681 - Xcc-8004.142.1 0.67 +1.1 131,681 - Xcc-8004.142.1 0.67 +0.2 131,681 - Xcc-8004.142.1 0.67 -0.8 131,681 - Xcc-8004.142.1 0.67 +0.3 131,681 - Xcc-8004.142.1 0.67 -0.5 131,681 - Xcc-8004.142.1 0.67 +0.1 131,681 - Xcc-8004.142.1 0.67 +0.3 131,815 + Xcc-8004.142.1 0.78 +0.8 131,815 + Xcc-8004.142.1 0.78 +0.0 131,815 + Xcc-8004.142.1 0.78 +1.0 131,815 + Xcc-8004.142.1 0.78 +1.1 131,815 + Xcc-8004.142.1 0.78 +0.8 131,815 + Xcc-8004.142.1 0.78 +0.6 131,815 + Xcc-8004.142.1 0.78 +0.8 131,815 + Xcc-8004.142.1 0.78 -0.1 131,815 + Xcc-8004.142.1 0.78 -1.0 131,815 + Xcc-8004.142.1 0.78 +0.2 131,815 + Xcc-8004.142.1 0.78 +2.2 131,815 + Xcc-8004.142.1 0.78 -0.8 131,815 + Xcc-8004.142.1 0.78 -0.6 131,816 - Xcc-8004.142.1 0.78 +1.0 131,816 - Xcc-8004.142.1 0.78 -0.0 131,816 - Xcc-8004.142.1 0.78 -0.8 131,816 - Xcc-8004.142.1 0.78 +0.0 131,816 - Xcc-8004.142.1 0.78 -1.2 131,816 - Xcc-8004.142.1 0.78 -0.4 131,816 - Xcc-8004.142.1 0.78 -1.5 131,816 - Xcc-8004.142.1 0.78 -1.0 131,816 - Xcc-8004.142.1 0.78 -1.8 131,816 - Xcc-8004.142.1 0.78 -1.1 131,903 + Xcc-8004.142.1 0.86 -0.6 131,903 + Xcc-8004.142.1 0.86 -0.6 131,903 + Xcc-8004.142.1 0.86 +0.1 131,903 + Xcc-8004.142.1 0.86 -0.2 131,903 + Xcc-8004.142.1 0.86 +0.7 131,903 + Xcc-8004.142.1 0.86 +0.3 131,904 - Xcc-8004.142.1 0.86 -0.3 131,904 - Xcc-8004.142.1 0.86 +0.8 131,904 - Xcc-8004.142.1 0.86 +0.2 131,904 - Xcc-8004.142.1 0.86 -0.6 131,904 - Xcc-8004.142.1 0.86 +0.8 131,904 - Xcc-8004.142.1 0.86 -1.3 131,904 - Xcc-8004.142.1 0.86 +0.8 131,977 + -0.3 131,977 + -0.2 131,978 - +0.8 131,978 - -0.0 131,995 + -0.8 131,995 + +0.1 131,995 + +0.3 131,995 + +0.7 131,995 + -0.4 131,995 + -0.5 131,995 + +0.8 131,995 + +0.1 131,996 - +0.1 131,996 - +1.2 131,996 - +1.3 131,996 - +0.6 131,996 - -1.2 132,101 + +0.8 132,101 + -0.3 132,101 + +0.4 132,101 + -0.4 132,101 + +0.3 132,102 - -1.3 132,102 - -0.2 132,102 - +0.4 132,102 - -0.4 132,154 + -0.8 132,154 + -0.5 132,155 - +0.4 132,155 - -0.4 132,155 - -0.5 132,155 - -0.7 132,225 - Xcc-8004.143.1 0.36 -0.4 132,225 - Xcc-8004.143.1 0.36 -0.8 132,256 + Xcc-8004.143.1 0.54 -0.6 132,256 + Xcc-8004.143.1 0.54 -3.3 132,256 + Xcc-8004.143.1 0.54 +2.8 132,256 + Xcc-8004.143.1 0.54 -2.2 132,257 - Xcc-8004.143.1 0.54 +0.8 132,257 - Xcc-8004.143.1 0.54 +0.8 132,314 - Xcc-8004.143.1 0.86 -1.4 132,390 + -0.2 132,391 - -0.6 132,391 - +0.5 132,400 - -0.1 132,526 - Xcc-8004.144.1 0.27 +0.8 132,549 + Xcc-8004.144.1 0.31 -0.9 132,550 - Xcc-8004.144.1 0.31 -1.2 132,867 + Xcc-8004.144.1 0.80 -1.8 132,867 + Xcc-8004.144.1 0.80 +1.4 132,868 - Xcc-8004.144.1 0.80 -0.8
Or see this region's nucleotide sequence