Experiment: Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1265.1 and Xcc-8004.1266.1 overlap by 4 nucleotides Xcc-8004.1266.1 and Xcc-8004.1267.1 are separated by 2 nucleotides
Xcc-8004.1265.1: Xcc-8004.1265.1 - sodium/alanine symporter family protein, at 1,203,841 to 1,205,334
Xcc-8004.1265.1
Xcc-8004.1266.1: Xcc-8004.1266.1 - hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-], at 1,205,331 to 1,206,233
Xcc-8004.1266.1
Xcc-8004.1267.1: Xcc-8004.1267.1 - Carboxylesterase, type B, at 1,206,236 to 1,207,744
Xcc-8004.1267.1
Position (kb) 1205
1206
1207 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1204.537 kb on + strand, within Xcc-8004.1265.1 at 1204.537 kb on + strand, within Xcc-8004.1265.1 at 1204.537 kb on + strand, within Xcc-8004.1265.1 at 1204.687 kb on + strand, within Xcc-8004.1265.1 at 1204.765 kb on + strand, within Xcc-8004.1265.1 at 1204.769 kb on + strand, within Xcc-8004.1265.1 at 1204.769 kb on + strand, within Xcc-8004.1265.1 at 1204.769 kb on + strand, within Xcc-8004.1265.1 at 1204.769 kb on + strand, within Xcc-8004.1265.1 at 1204.787 kb on - strand, within Xcc-8004.1265.1 at 1204.846 kb on + strand, within Xcc-8004.1265.1 at 1204.846 kb on + strand, within Xcc-8004.1265.1 at 1204.847 kb on - strand, within Xcc-8004.1265.1 at 1204.847 kb on - strand, within Xcc-8004.1265.1 at 1204.855 kb on + strand, within Xcc-8004.1265.1 at 1204.856 kb on - strand, within Xcc-8004.1265.1 at 1204.856 kb on - strand, within Xcc-8004.1265.1 at 1204.885 kb on + strand, within Xcc-8004.1265.1 at 1204.886 kb on - strand, within Xcc-8004.1265.1 at 1205.017 kb on + strand, within Xcc-8004.1265.1 at 1205.020 kb on + strand, within Xcc-8004.1265.1 at 1205.020 kb on + strand, within Xcc-8004.1265.1 at 1205.021 kb on - strand, within Xcc-8004.1265.1 at 1205.023 kb on + strand, within Xcc-8004.1265.1 at 1205.023 kb on + strand, within Xcc-8004.1265.1 at 1205.023 kb on + strand, within Xcc-8004.1265.1 at 1205.023 kb on + strand, within Xcc-8004.1265.1 at 1205.023 kb on + strand, within Xcc-8004.1265.1 at 1205.023 kb on + strand, within Xcc-8004.1265.1 at 1205.023 kb on + strand, within Xcc-8004.1265.1 at 1205.023 kb on + strand, within Xcc-8004.1265.1 at 1205.023 kb on + strand, within Xcc-8004.1265.1 at 1205.023 kb on + strand, within Xcc-8004.1265.1 at 1205.024 kb on - strand, within Xcc-8004.1265.1 at 1205.047 kb on + strand, within Xcc-8004.1265.1 at 1205.047 kb on + strand, within Xcc-8004.1265.1 at 1205.048 kb on - strand, within Xcc-8004.1265.1 at 1205.133 kb on + strand, within Xcc-8004.1265.1 at 1205.246 kb on - strand at 1205.515 kb on - strand, within Xcc-8004.1266.1 at 1205.515 kb on - strand, within Xcc-8004.1266.1 at 1205.515 kb on - strand, within Xcc-8004.1266.1 at 1205.574 kb on + strand, within Xcc-8004.1266.1 at 1205.575 kb on - strand, within Xcc-8004.1266.1 at 1206.133 kb on + strand, within Xcc-8004.1266.1 at 1206.231 kb on + strand at 1206.231 kb on + strand at 1206.232 kb on - strand at 1206.557 kb on + strand, within Xcc-8004.1267.1 at 1206.557 kb on + strand, within Xcc-8004.1267.1 at 1206.557 kb on + strand, within Xcc-8004.1267.1 at 1206.557 kb on + strand, within Xcc-8004.1267.1 at 1206.557 kb on + strand, within Xcc-8004.1267.1 at 1206.557 kb on + strand, within Xcc-8004.1267.1 at 1206.557 kb on + strand, within Xcc-8004.1267.1 at 1206.558 kb on - strand, within Xcc-8004.1267.1 at 1206.558 kb on - strand, within Xcc-8004.1267.1 at 1206.558 kb on - strand, within Xcc-8004.1267.1 at 1206.561 kb on + strand, within Xcc-8004.1267.1 at 1206.562 kb on - strand, within Xcc-8004.1267.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x remove 1,204,537 + Xcc-8004.1265.1 0.47 -0.3 1,204,537 + Xcc-8004.1265.1 0.47 +1.7 1,204,537 + Xcc-8004.1265.1 0.47 +1.9 1,204,687 + Xcc-8004.1265.1 0.57 -0.8 1,204,765 + Xcc-8004.1265.1 0.62 -0.6 1,204,769 + Xcc-8004.1265.1 0.62 +0.5 1,204,769 + Xcc-8004.1265.1 0.62 -0.4 1,204,769 + Xcc-8004.1265.1 0.62 -1.9 1,204,769 + Xcc-8004.1265.1 0.62 -0.1 1,204,787 - Xcc-8004.1265.1 0.63 -0.1 1,204,846 + Xcc-8004.1265.1 0.67 -0.8 1,204,846 + Xcc-8004.1265.1 0.67 -0.6 1,204,847 - Xcc-8004.1265.1 0.67 +1.5 1,204,847 - Xcc-8004.1265.1 0.67 +0.5 1,204,855 + Xcc-8004.1265.1 0.68 +1.9 1,204,856 - Xcc-8004.1265.1 0.68 +1.7 1,204,856 - Xcc-8004.1265.1 0.68 +1.1 1,204,885 + Xcc-8004.1265.1 0.70 -0.5 1,204,886 - Xcc-8004.1265.1 0.70 +1.2 1,205,017 + Xcc-8004.1265.1 0.79 +0.6 1,205,020 + Xcc-8004.1265.1 0.79 -0.9 1,205,020 + Xcc-8004.1265.1 0.79 -0.2 1,205,021 - Xcc-8004.1265.1 0.79 -0.1 1,205,023 + Xcc-8004.1265.1 0.79 -1.0 1,205,023 + Xcc-8004.1265.1 0.79 -0.7 1,205,023 + Xcc-8004.1265.1 0.79 -0.1 1,205,023 + Xcc-8004.1265.1 0.79 +0.2 1,205,023 + Xcc-8004.1265.1 0.79 +0.3 1,205,023 + Xcc-8004.1265.1 0.79 +0.3 1,205,023 + Xcc-8004.1265.1 0.79 -0.4 1,205,023 + Xcc-8004.1265.1 0.79 +0.4 1,205,023 + Xcc-8004.1265.1 0.79 +0.6 1,205,023 + Xcc-8004.1265.1 0.79 +0.8 1,205,024 - Xcc-8004.1265.1 0.79 +0.5 1,205,047 + Xcc-8004.1265.1 0.81 -1.2 1,205,047 + Xcc-8004.1265.1 0.81 -0.9 1,205,048 - Xcc-8004.1265.1 0.81 +1.3 1,205,133 + Xcc-8004.1265.1 0.86 +0.9 1,205,246 - -2.1 1,205,515 - Xcc-8004.1266.1 0.20 +0.0 1,205,515 - Xcc-8004.1266.1 0.20 -0.7 1,205,515 - Xcc-8004.1266.1 0.20 -1.4 1,205,574 + Xcc-8004.1266.1 0.27 -1.1 1,205,575 - Xcc-8004.1266.1 0.27 +0.9 1,206,133 + Xcc-8004.1266.1 0.89 +0.3 1,206,231 + +0.5 1,206,231 + +0.3 1,206,232 - +0.8 1,206,557 + Xcc-8004.1267.1 0.21 -1.7 1,206,557 + Xcc-8004.1267.1 0.21 +0.2 1,206,557 + Xcc-8004.1267.1 0.21 +1.5 1,206,557 + Xcc-8004.1267.1 0.21 -0.0 1,206,557 + Xcc-8004.1267.1 0.21 +0.4 1,206,557 + Xcc-8004.1267.1 0.21 -0.2 1,206,557 + Xcc-8004.1267.1 0.21 -0.2 1,206,558 - Xcc-8004.1267.1 0.21 -0.7 1,206,558 - Xcc-8004.1267.1 0.21 -1.6 1,206,558 - Xcc-8004.1267.1 0.21 +0.4 1,206,561 + Xcc-8004.1267.1 0.22 -0.1 1,206,562 - Xcc-8004.1267.1 0.22 -0.8
Or see this region's nucleotide sequence