Experiment: Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1006.1 and Xcc-8004.1007.1 are separated by 60 nucleotides Xcc-8004.1007.1 and Xcc-8004.1008.1 are separated by 368 nucleotides
Xcc-8004.1006.1: Xcc-8004.1006.1 - Glutaredoxin-like protein, at 951,295 to 952,221
Xcc-8004.1006.1
Xcc-8004.1007.1: Xcc-8004.1007.1 - acetylxylan esterase, at 952,282 to 953,058
Xcc-8004.1007.1
Xcc-8004.1008.1: Xcc-8004.1008.1 - FIG01211317: hypothetical protein, at 953,427 to 954,122
Xcc-8004.1008.1
Position (kb) 952
953
954 Strain fitness (log2 ratio) -1
0
1
2 at 951.299 kb on + strand at 951.299 kb on + strand at 951.300 kb on - strand at 951.300 kb on - strand at 951.359 kb on + strand at 951.360 kb on - strand at 951.360 kb on - strand at 951.369 kb on + strand at 951.408 kb on + strand, within Xcc-8004.1006.1 at 952.259 kb on + strand at 952.259 kb on + strand at 952.259 kb on + strand at 952.259 kb on + strand at 952.260 kb on - strand at 952.303 kb on + strand at 952.469 kb on - strand, within Xcc-8004.1007.1 at 952.806 kb on - strand, within Xcc-8004.1007.1 at 953.285 kb on + strand at 953.285 kb on + strand at 953.306 kb on + strand at 953.306 kb on + strand at 953.307 kb on - strand at 953.307 kb on - strand at 953.307 kb on - strand at 953.310 kb on + strand at 953.311 kb on - strand at 953.545 kb on + strand, within Xcc-8004.1008.1 at 953.545 kb on + strand, within Xcc-8004.1008.1 at 953.546 kb on - strand, within Xcc-8004.1008.1 at 953.546 kb on - strand, within Xcc-8004.1008.1 at 953.723 kb on - strand, within Xcc-8004.1008.1 at 953.801 kb on + strand, within Xcc-8004.1008.1 at 953.964 kb on + strand, within Xcc-8004.1008.1 at 953.964 kb on + strand, within Xcc-8004.1008.1 at 953.964 kb on + strand, within Xcc-8004.1008.1 at 954.019 kb on + strand, within Xcc-8004.1008.1 at 954.020 kb on - strand, within Xcc-8004.1008.1 at 954.022 kb on + strand, within Xcc-8004.1008.1 at 954.022 kb on + strand, within Xcc-8004.1008.1 at 954.022 kb on + strand, within Xcc-8004.1008.1 at 954.023 kb on - strand, within Xcc-8004.1008.1 at 954.026 kb on - strand, within Xcc-8004.1008.1 at 954.026 kb on - strand, within Xcc-8004.1008.1 at 954.026 kb on - strand, within Xcc-8004.1008.1 at 954.031 kb on + strand, within Xcc-8004.1008.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x remove 951,299 + -1.7 951,299 + +1.0 951,300 - +0.6 951,300 - -0.2 951,359 + +0.5 951,360 - +1.2 951,360 - -0.1 951,369 + +1.9 951,408 + Xcc-8004.1006.1 0.12 -0.3 952,259 + +1.1 952,259 + +0.4 952,259 + -0.4 952,259 + -0.6 952,260 - +0.4 952,303 + -0.5 952,469 - Xcc-8004.1007.1 0.24 -0.9 952,806 - Xcc-8004.1007.1 0.67 -1.3 953,285 + -0.0 953,285 + -1.4 953,306 + -1.2 953,306 + +0.5 953,307 - -0.9 953,307 - +1.9 953,307 - -0.3 953,310 + +0.1 953,311 - +1.3 953,545 + Xcc-8004.1008.1 0.17 -0.1 953,545 + Xcc-8004.1008.1 0.17 +0.6 953,546 - Xcc-8004.1008.1 0.17 -0.4 953,546 - Xcc-8004.1008.1 0.17 -0.3 953,723 - Xcc-8004.1008.1 0.43 -1.1 953,801 + Xcc-8004.1008.1 0.54 +0.7 953,964 + Xcc-8004.1008.1 0.77 +0.5 953,964 + Xcc-8004.1008.1 0.77 +1.0 953,964 + Xcc-8004.1008.1 0.77 +1.5 954,019 + Xcc-8004.1008.1 0.85 +0.4 954,020 - Xcc-8004.1008.1 0.85 +0.7 954,022 + Xcc-8004.1008.1 0.85 -0.4 954,022 + Xcc-8004.1008.1 0.85 -0.8 954,022 + Xcc-8004.1008.1 0.85 -0.7 954,023 - Xcc-8004.1008.1 0.86 +0.2 954,026 - Xcc-8004.1008.1 0.86 +1.5 954,026 - Xcc-8004.1008.1 0.86 +0.1 954,026 - Xcc-8004.1008.1 0.86 +0.6 954,031 + Xcc-8004.1008.1 0.87 -1.1
Or see this region's nucleotide sequence