Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_708

Experiment: D-Cycloserine 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_707 and Pf1N1B4_708 are separated by 96 nucleotidesPf1N1B4_708 and Pf1N1B4_709 are separated by 96 nucleotidesPf1N1B4_709 and Pf1N1B4_710 are separated by 6 nucleotides Pf1N1B4_707 - Nucleoside-diphosphate-sugar epimerases, at 806,937 to 807,929 _707 Pf1N1B4_708 - Chromosome initiation inhibitor, at 808,026 to 808,925 _708 Pf1N1B4_709 - FIG00953860: hypothetical protein, at 809,022 to 809,423 _709 Pf1N1B4_710 - Transporter, LysE family, at 809,430 to 810,032 _710 Position (kb) 808 809Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 807.208 kb on + strand, within Pf1N1B4_707at 807.208 kb on + strand, within Pf1N1B4_707at 807.208 kb on + strand, within Pf1N1B4_707at 807.208 kb on + strandat 807.208 kb on + strand, within Pf1N1B4_707at 807.208 kb on + strand, within Pf1N1B4_707at 807.208 kb on + strand, within Pf1N1B4_707at 807.209 kb on - strand, within Pf1N1B4_707at 807.209 kb on - strand, within Pf1N1B4_707at 807.209 kb on - strand, within Pf1N1B4_707at 807.209 kb on - strand, within Pf1N1B4_707at 807.209 kb on - strand, within Pf1N1B4_707at 807.209 kb on - strand, within Pf1N1B4_707at 807.209 kb on - strand, within Pf1N1B4_707at 807.209 kb on - strand, within Pf1N1B4_707at 807.256 kb on + strand, within Pf1N1B4_707at 807.256 kb on + strand, within Pf1N1B4_707at 807.257 kb on - strand, within Pf1N1B4_707at 807.502 kb on + strand, within Pf1N1B4_707at 807.503 kb on - strand, within Pf1N1B4_707at 807.503 kb on - strand, within Pf1N1B4_707at 807.503 kb on - strandat 807.583 kb on + strand, within Pf1N1B4_707at 807.584 kb on - strand, within Pf1N1B4_707at 807.584 kb on - strand, within Pf1N1B4_707at 807.941 kb on - strandat 807.941 kb on - strandat 807.941 kb on - strandat 807.952 kb on + strandat 807.953 kb on - strandat 807.967 kb on - strandat 807.981 kb on - strandat 808.148 kb on + strandat 808.148 kb on + strand, within Pf1N1B4_708at 808.148 kb on + strand, within Pf1N1B4_708at 808.148 kb on + strand, within Pf1N1B4_708at 808.149 kb on - strand, within Pf1N1B4_708at 808.269 kb on + strand, within Pf1N1B4_708at 808.269 kb on + strand, within Pf1N1B4_708at 808.269 kb on + strandat 808.269 kb on + strand, within Pf1N1B4_708at 808.269 kb on + strand, within Pf1N1B4_708at 808.269 kb on + strand, within Pf1N1B4_708at 808.269 kb on + strand, within Pf1N1B4_708at 808.270 kb on - strand, within Pf1N1B4_708at 808.270 kb on - strandat 808.270 kb on - strand, within Pf1N1B4_708at 808.270 kb on - strandat 808.270 kb on - strand, within Pf1N1B4_708at 808.270 kb on - strand, within Pf1N1B4_708at 808.324 kb on - strand, within Pf1N1B4_708at 808.549 kb on - strand, within Pf1N1B4_708at 808.908 kb on + strandat 808.908 kb on + strandat 808.909 kb on - strandat 808.909 kb on - strandat 808.916 kb on - strandat 809.088 kb on + strand, within Pf1N1B4_709at 809.088 kb on + strand, within Pf1N1B4_709at 809.088 kb on + strand, within Pf1N1B4_709at 809.088 kb on + strand, within Pf1N1B4_709at 809.088 kb on + strand, within Pf1N1B4_709at 809.089 kb on - strand, within Pf1N1B4_709at 809.089 kb on - strand, within Pf1N1B4_709at 809.089 kb on - strand, within Pf1N1B4_709at 809.220 kb on + strand, within Pf1N1B4_709at 809.221 kb on - strand, within Pf1N1B4_709at 809.221 kb on - strandat 809.221 kb on - strand, within Pf1N1B4_709at 809.221 kb on - strand, within Pf1N1B4_709at 809.341 kb on - strand, within Pf1N1B4_709at 809.341 kb on - strandat 809.393 kb on - strandat 809.421 kb on + strandat 809.429 kb on + strandat 809.429 kb on + strandat 809.430 kb on - strandat 809.430 kb on - strandat 809.430 kb on - strandat 809.442 kb on + strandat 809.442 kb on + strandat 809.442 kb on + strandat 809.442 kb on + strandat 809.442 kb on + strandat 809.442 kb on + strandat 809.669 kb on - strand, within Pf1N1B4_710at 809.669 kb on - strandat 809.744 kb on - strandat 809.806 kb on - strandat 809.865 kb on + strand, within Pf1N1B4_710at 809.865 kb on + strand, within Pf1N1B4_710at 809.866 kb on - strand, within Pf1N1B4_710at 809.866 kb on - strand, within Pf1N1B4_710at 809.893 kb on + strand, within Pf1N1B4_710at 809.893 kb on + strand, within Pf1N1B4_710at 809.912 kb on - strand, within Pf1N1B4_710

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.1 mg/ml
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807,208 + Pf1N1B4_707 0.27 -0.6
807,208 + Pf1N1B4_707 0.27 +0.6
807,208 + Pf1N1B4_707 0.27 -0.0
807,208 + +1.0
807,208 + Pf1N1B4_707 0.27 -0.6
807,208 + Pf1N1B4_707 0.27 +2.6
807,208 + Pf1N1B4_707 0.27 -1.6
807,209 - Pf1N1B4_707 0.27 -0.0
807,209 - Pf1N1B4_707 0.27 +0.8
807,209 - Pf1N1B4_707 0.27 -0.0
807,209 - Pf1N1B4_707 0.27 +0.6
807,209 - Pf1N1B4_707 0.27 +1.0
807,209 - Pf1N1B4_707 0.27 +0.1
807,209 - Pf1N1B4_707 0.27 -0.7
807,209 - Pf1N1B4_707 0.27 -0.7
807,256 + Pf1N1B4_707 0.32 -1.0
807,256 + Pf1N1B4_707 0.32 +1.0
807,257 - Pf1N1B4_707 0.32 -1.0
807,502 + Pf1N1B4_707 0.57 +0.3
807,503 - Pf1N1B4_707 0.57 -1.0
807,503 - Pf1N1B4_707 0.57 -2.0
807,503 - -0.0
807,583 + Pf1N1B4_707 0.65 -1.0
807,584 - Pf1N1B4_707 0.65 -0.8
807,584 - Pf1N1B4_707 0.65 -1.6
807,941 - +0.4
807,941 - +0.6
807,941 - -1.8
807,952 + -0.5
807,953 - -0.7
807,967 - +0.6
807,981 - -0.0
808,148 + -0.0
808,148 + Pf1N1B4_708 0.14 +1.0
808,148 + Pf1N1B4_708 0.14 -0.0
808,148 + Pf1N1B4_708 0.14 -2.8
808,149 - Pf1N1B4_708 0.14 -1.8
808,269 + Pf1N1B4_708 0.27 -1.0
808,269 + Pf1N1B4_708 0.27 -2.3
808,269 + -1.0
808,269 + Pf1N1B4_708 0.27 -0.3
808,269 + Pf1N1B4_708 0.27 -1.0
808,269 + Pf1N1B4_708 0.27 +1.8
808,269 + Pf1N1B4_708 0.27 +0.6
808,270 - Pf1N1B4_708 0.27 -2.3
808,270 - +0.6
808,270 - Pf1N1B4_708 0.27 -1.8
808,270 - -1.0
808,270 - Pf1N1B4_708 0.27 -0.7
808,270 - Pf1N1B4_708 0.27 -2.0
808,324 - Pf1N1B4_708 0.33 -1.4
808,549 - Pf1N1B4_708 0.58 -2.6
808,908 + -2.3
808,908 + -2.3
808,909 - -1.0
808,909 - -0.6
808,916 - -2.6
809,088 + Pf1N1B4_709 0.16 +1.2
809,088 + Pf1N1B4_709 0.16 -0.6
809,088 + Pf1N1B4_709 0.16 -0.6
809,088 + Pf1N1B4_709 0.16 -1.0
809,088 + Pf1N1B4_709 0.16 +0.7
809,089 - Pf1N1B4_709 0.17 -1.0
809,089 - Pf1N1B4_709 0.17 -1.6
809,089 - Pf1N1B4_709 0.17 -0.4
809,220 + Pf1N1B4_709 0.49 -0.7
809,221 - Pf1N1B4_709 0.50 -1.6
809,221 - -1.0
809,221 - Pf1N1B4_709 0.50 -0.2
809,221 - Pf1N1B4_709 0.50 +1.0
809,341 - Pf1N1B4_709 0.79 -0.0
809,341 - -1.0
809,393 - +1.3
809,421 + +2.0
809,429 + -0.6
809,429 + -0.7
809,430 - -0.7
809,430 - -1.0
809,430 - -1.6
809,442 + -0.6
809,442 + -2.0
809,442 + +1.2
809,442 + -2.0
809,442 + -0.0
809,442 + +0.7
809,669 - Pf1N1B4_710 0.40 +1.6
809,669 - +1.0
809,744 - +1.6
809,806 - +1.0
809,865 + Pf1N1B4_710 0.72 +0.0
809,865 + Pf1N1B4_710 0.72 +0.2
809,866 - Pf1N1B4_710 0.72 +0.0
809,866 - Pf1N1B4_710 0.72 -0.5
809,893 + Pf1N1B4_710 0.77 -1.0
809,893 + Pf1N1B4_710 0.77 -0.9
809,912 - Pf1N1B4_710 0.80 +0.0

Or see this region's nucleotide sequence