Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2674

Experiment: D-Cycloserine 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2673 and Pf1N1B4_2674 are separated by 103 nucleotidesPf1N1B4_2674 and Pf1N1B4_2675 overlap by 15 nucleotides Pf1N1B4_2673 - Aldehyde dehydrogenase (EC 1.2.1.3), at 3,010,438 to 3,011,958 _2673 Pf1N1B4_2674 - hypothetical protein, at 3,012,062 to 3,012,424 _2674 Pf1N1B4_2675 - Nitrogen regulation protein NR(I), at 3,012,410 to 3,014,323 _2675 Position (kb) 3012 3013Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3011.274 kb on + strand, within Pf1N1B4_2673at 3011.412 kb on + strand, within Pf1N1B4_2673at 3011.514 kb on - strand, within Pf1N1B4_2673at 3011.820 kb on + strandat 3011.820 kb on + strandat 3011.821 kb on - strandat 3011.821 kb on - strandat 3011.821 kb on - strandat 3011.821 kb on - strandat 3011.821 kb on - strandat 3011.821 kb on - strandat 3011.845 kb on - strandat 3011.845 kb on - strandat 3011.894 kb on + strandat 3011.894 kb on + strandat 3011.894 kb on + strandat 3011.894 kb on + strandat 3011.894 kb on + strandat 3011.894 kb on + strandat 3011.894 kb on + strandat 3011.894 kb on + strandat 3011.894 kb on + strandat 3011.894 kb on + strandat 3011.894 kb on + strandat 3011.895 kb on - strandat 3011.895 kb on - strandat 3011.895 kb on - strandat 3011.895 kb on - strandat 3011.895 kb on - strandat 3011.895 kb on - strandat 3011.895 kb on - strandat 3011.895 kb on - strandat 3011.899 kb on - strandat 3011.903 kb on + strandat 3011.903 kb on + strandat 3011.903 kb on + strandat 3011.903 kb on + strandat 3011.903 kb on + strandat 3011.903 kb on + strandat 3011.903 kb on + strandat 3011.904 kb on - strandat 3011.904 kb on - strandat 3011.904 kb on - strandat 3011.951 kb on + strandat 3011.986 kb on + strandat 3011.986 kb on + strandat 3011.986 kb on + strandat 3011.986 kb on + strandat 3011.986 kb on + strandat 3011.986 kb on + strandat 3011.986 kb on + strandat 3011.987 kb on - strandat 3011.987 kb on - strandat 3011.987 kb on - strandat 3011.987 kb on - strandat 3011.988 kb on + strandat 3011.988 kb on + strandat 3011.988 kb on + strandat 3011.988 kb on + strandat 3011.989 kb on - strandat 3012.016 kb on + strandat 3012.023 kb on - strandat 3012.058 kb on + strandat 3012.233 kb on + strand, within Pf1N1B4_2674at 3012.234 kb on - strand, within Pf1N1B4_2674at 3012.372 kb on - strand, within Pf1N1B4_2674at 3012.401 kb on + strandat 3012.404 kb on + strandat 3012.404 kb on + strandat 3012.404 kb on + strandat 3012.405 kb on - strandat 3012.405 kb on - strandat 3012.405 kb on - strandat 3012.536 kb on + strandat 3012.537 kb on - strandat 3012.537 kb on - strandat 3012.537 kb on - strandat 3012.806 kb on - strand, within Pf1N1B4_2675at 3012.883 kb on + strand, within Pf1N1B4_2675at 3012.884 kb on - strand, within Pf1N1B4_2675at 3013.040 kb on + strand, within Pf1N1B4_2675at 3013.040 kb on + strand, within Pf1N1B4_2675at 3013.040 kb on + strand, within Pf1N1B4_2675at 3013.041 kb on - strand, within Pf1N1B4_2675at 3013.041 kb on - strandat 3013.041 kb on - strand, within Pf1N1B4_2675at 3013.052 kb on + strand, within Pf1N1B4_2675at 3013.052 kb on + strand, within Pf1N1B4_2675at 3013.053 kb on - strand, within Pf1N1B4_2675at 3013.189 kb on + strand, within Pf1N1B4_2675at 3013.348 kb on + strand, within Pf1N1B4_2675at 3013.348 kb on + strand, within Pf1N1B4_2675at 3013.348 kb on + strand, within Pf1N1B4_2675at 3013.349 kb on - strand, within Pf1N1B4_2675

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.1 mg/ml
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3,011,274 + Pf1N1B4_2673 0.55 -0.7
3,011,412 + Pf1N1B4_2673 0.64 -1.8
3,011,514 - Pf1N1B4_2673 0.71 +0.8
3,011,820 + -1.8
3,011,820 + -2.8
3,011,821 - +1.1
3,011,821 - -0.5
3,011,821 - +0.7
3,011,821 - +0.0
3,011,821 - +1.2
3,011,821 - -1.3
3,011,845 - -1.6
3,011,845 - +1.3
3,011,894 + -0.3
3,011,894 + +1.1
3,011,894 + -0.5
3,011,894 + -0.8
3,011,894 + -1.2
3,011,894 + +0.4
3,011,894 + +0.4
3,011,894 + +0.2
3,011,894 + +0.3
3,011,894 + +0.7
3,011,894 + -0.8
3,011,895 - -0.8
3,011,895 - +2.1
3,011,895 - -1.8
3,011,895 - +0.6
3,011,895 - +1.8
3,011,895 - -0.3
3,011,895 - +1.6
3,011,895 - -0.2
3,011,899 - +1.2
3,011,903 + +0.7
3,011,903 + +1.2
3,011,903 + +0.8
3,011,903 + +0.8
3,011,903 + +1.0
3,011,903 + -1.2
3,011,903 + -1.1
3,011,904 - +0.2
3,011,904 - -1.3
3,011,904 - +1.2
3,011,951 + -0.3
3,011,986 + +0.2
3,011,986 + +0.2
3,011,986 + +0.2
3,011,986 + -1.8
3,011,986 + +0.2
3,011,986 + +0.2
3,011,986 + -0.2
3,011,987 - +1.0
3,011,987 - -0.3
3,011,987 - -0.8
3,011,987 - +0.2
3,011,988 + -0.3
3,011,988 + -2.1
3,011,988 + -0.5
3,011,988 + -0.8
3,011,989 - +1.8
3,012,016 + +1.2
3,012,023 - -1.6
3,012,058 + -0.1
3,012,233 + Pf1N1B4_2674 0.47 -1.2
3,012,234 - Pf1N1B4_2674 0.47 -1.8
3,012,372 - Pf1N1B4_2674 0.85 +0.2
3,012,401 + -0.2
3,012,404 + -1.3
3,012,404 + +0.2
3,012,404 + +1.8
3,012,405 - -0.5
3,012,405 - +0.7
3,012,405 - +1.2
3,012,536 + -1.8
3,012,537 - +1.5
3,012,537 - -1.2
3,012,537 - +0.2
3,012,806 - Pf1N1B4_2675 0.21 +1.2
3,012,883 + Pf1N1B4_2675 0.25 +0.2
3,012,884 - Pf1N1B4_2675 0.25 +0.2
3,013,040 + Pf1N1B4_2675 0.33 -0.2
3,013,040 + Pf1N1B4_2675 0.33 +0.7
3,013,040 + Pf1N1B4_2675 0.33 -1.3
3,013,041 - Pf1N1B4_2675 0.33 -0.8
3,013,041 - -1.3
3,013,041 - Pf1N1B4_2675 0.33 +2.2
3,013,052 + Pf1N1B4_2675 0.34 -0.8
3,013,052 + Pf1N1B4_2675 0.34 +0.2
3,013,053 - Pf1N1B4_2675 0.34 -0.6
3,013,189 + Pf1N1B4_2675 0.41 +0.7
3,013,348 + Pf1N1B4_2675 0.49 -1.1
3,013,348 + Pf1N1B4_2675 0.49 -2.8
3,013,348 + Pf1N1B4_2675 0.49 +0.4
3,013,349 - Pf1N1B4_2675 0.49 +0.7

Or see this region's nucleotide sequence