Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS15970

Experiment: Recovery broth with Nisin from Lactococcus lactis 7e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Nisin from Lactococcus lactis 7e-04 mM
1,339,027	-		BBR_RS15965	0.11	-0.2
1,339,073	+		BBR_RS15965	0.16	-0.3
1,339,073	+		BBR_RS15965	0.16	-1.8
1,339,148	+		BBR_RS15965	0.25	-0.1
1,339,234	-		BBR_RS15965	0.35	+1.0
1,339,239	-		BBR_RS15965	0.35	+0.7
1,339,247	-		BBR_RS15965	0.36	-2.1
1,339,247	-		BBR_RS15965	0.36	+0.1
1,339,306	+		BBR_RS15965	0.43	+0.8
1,339,331	+		BBR_RS15965	0.46	+0.8
1,339,331	+		BBR_RS15965	0.46	+1.6
1,339,332	-		BBR_RS15965	0.46	+0.8
1,339,332	-		BBR_RS15965	0.46	-0.1
1,339,347	+		BBR_RS15965	0.47	+0.2
1,339,400	+		BBR_RS15965	0.54	+0.6
1,339,426	-		BBR_RS15965	0.57	-0.3
1,339,438	-		BBR_RS15965	0.58	+0.2
1,339,451	-		BBR_RS15965	0.59	+1.3
1,339,482	+		BBR_RS15965	0.63	-1.4
1,339,490	-		BBR_RS15965	0.64	-0.7
1,339,684	-		BBR_RS15965	0.86	+0.0
1,339,717	+		BBR_RS15965	0.90	+1.5
1,339,748	-				+0.3
1,339,768	-				+0.8
1,339,772	-				-0.1
1,339,772	-				-0.4
1,339,779	-				+2.1
1,339,843	-				+0.2
1,339,848	-				-0.5
1,339,894	-				-0.9
1,339,901	-				+0.7
1,339,978	+				-1.4
1,340,039	-				+0.4
1,340,103	+		BBR_RS15970	0.15	-3.5
1,340,103	+		BBR_RS15970	0.15	-3.7
1,340,103	+		BBR_RS15970	0.15	-2.9
1,340,229	-		BBR_RS15970	0.35	-1.5
1,340,291	-		BBR_RS15970	0.45	-2.2
1,340,326	-		BBR_RS15970	0.51	-2.8
1,340,364	+		BBR_RS15970	0.57	-3.3
1,340,388	+		BBR_RS15970	0.61	-3.8
1,340,453	-		BBR_RS15970	0.71	-2.3
1,340,465	+		BBR_RS15970	0.73	-0.8
1,340,490	-		BBR_RS15970	0.77	-2.7
1,340,590	-				-3.2
1,340,726	-		BBR_RS15975	0.13	-4.8
1,340,867	+		BBR_RS15975	0.33	-1.4
1,340,871	-		BBR_RS15975	0.33	-2.8
1,340,916	+		BBR_RS15975	0.39	-3.3
1,340,937	+		BBR_RS15975	0.42	-0.0
1,340,939	+		BBR_RS15975	0.42	-2.5
1,340,947	-		BBR_RS15975	0.43	-2.7
1,340,957	+		BBR_RS15975	0.45	-4.0
1,340,965	-		BBR_RS15975	0.46	-4.0
1,340,996	+		BBR_RS15975	0.50	-2.8
1,341,008	+		BBR_RS15975	0.52	-1.8
1,341,023	+		BBR_RS15975	0.54	-3.5
1,341,047	+		BBR_RS15975	0.57	-2.7
1,341,055	-		BBR_RS15975	0.58	-2.4
1,341,080	-		BBR_RS15975	0.62	-3.4
1,341,099	+		BBR_RS15975	0.64	-3.7
1,341,128	-		BBR_RS15975	0.68	-3.0
1,341,174	-		BBR_RS15975	0.75	-4.4
1,341,179	-		BBR_RS15975	0.75	-4.3
1,341,190	-		BBR_RS15975	0.77	-3.7
1,341,265	+		BBR_RS15975	0.87	+0.8
1,341,279	+		BBR_RS15975	0.89	-2.4
1,341,287	-				-1.1
1,341,351	-				-3.5
1,341,361	+				-1.9
1,341,396	-				-3.5
1,341,402	-				-3.1
1,341,421	+				-3.4
1,341,447	-		BBR_RS15980	0.13	-1.5
1,341,468	-		BBR_RS15980	0.16	-5.0
1,341,468	-		BBR_RS15980	0.16	-2.4
1,341,468	-		BBR_RS15980	0.16	-4.0
1,341,468	-		BBR_RS15980	0.16	-2.6
1,341,566	-		BBR_RS15980	0.31	-2.5
1,341,566	-		BBR_RS15980	0.31	-4.3
1,341,613	+		BBR_RS15980	0.38	-2.9