Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_28295

Experiment: Furfuryl Alcohol 0.125 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_28290 and AO353_28295 are separated by 242 nucleotidesAO353_28295 and AO353_28300 are separated by 42 nucleotidesAO353_28300 and AO353_28305 are separated by 105 nucleotides AO353_28290: AO353_28290 - aldehyde dehydrogenase, at 6,166,634 to 6,168,106 _28290 AO353_28295: AO353_28295 - GNAT family acetyltransferase, at 6,168,349 to 6,169,206 _28295 AO353_28300: AO353_28300 - cupin, at 6,169,249 to 6,169,962 _28300 AO353_28305: AO353_28305 - hypothetical protein, at 6,170,068 to 6,170,439 _28305 Position (kb) 6168 6169 6170Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 6167.579 kb on - strand, within AO353_28290at 6167.579 kb on - strand, within AO353_28290at 6167.662 kb on - strand, within AO353_28290at 6167.766 kb on + strand, within AO353_28290at 6167.766 kb on + strand, within AO353_28290at 6167.766 kb on + strand, within AO353_28290at 6167.766 kb on + strand, within AO353_28290at 6167.766 kb on + strand, within AO353_28290at 6167.773 kb on + strand, within AO353_28290at 6167.774 kb on - strand, within AO353_28290at 6167.991 kb on + strandat 6167.991 kb on + strandat 6167.992 kb on - strandat 6168.046 kb on - strandat 6168.049 kb on + strandat 6168.049 kb on + strandat 6168.100 kb on + strandat 6168.100 kb on + strandat 6168.101 kb on - strandat 6168.101 kb on - strandat 6168.120 kb on + strandat 6168.121 kb on - strandat 6168.156 kb on + strandat 6168.200 kb on + strandat 6168.200 kb on + strandat 6168.200 kb on + strandat 6168.201 kb on - strandat 6168.201 kb on - strandat 6168.201 kb on - strandat 6168.204 kb on + strandat 6168.204 kb on + strandat 6168.204 kb on + strandat 6168.204 kb on + strandat 6168.205 kb on - strandat 6168.205 kb on - strandat 6168.205 kb on - strandat 6168.205 kb on - strandat 6168.205 kb on - strandat 6168.207 kb on + strandat 6168.207 kb on + strandat 6168.207 kb on + strandat 6168.207 kb on + strandat 6168.207 kb on + strandat 6168.207 kb on + strandat 6168.207 kb on + strandat 6168.207 kb on + strandat 6168.207 kb on + strandat 6168.207 kb on + strandat 6168.207 kb on + strandat 6168.207 kb on + strandat 6168.207 kb on + strandat 6168.207 kb on + strandat 6168.207 kb on + strandat 6168.207 kb on + strandat 6168.207 kb on + strandat 6168.207 kb on + strandat 6168.207 kb on + strandat 6168.208 kb on - strandat 6168.208 kb on - strandat 6168.208 kb on - strandat 6168.208 kb on - strandat 6168.208 kb on - strandat 6168.288 kb on + strandat 6168.288 kb on + strandat 6168.288 kb on + strandat 6168.373 kb on + strandat 6168.373 kb on + strandat 6168.373 kb on + strandat 6168.373 kb on + strandat 6168.373 kb on + strandat 6168.374 kb on - strandat 6168.374 kb on - strandat 6168.374 kb on - strandat 6168.374 kb on - strandat 6168.374 kb on - strandat 6168.374 kb on - strandat 6168.374 kb on - strandat 6168.374 kb on - strandat 6168.374 kb on - strandat 6168.688 kb on + strand, within AO353_28295at 6168.950 kb on - strand, within AO353_28295at 6168.950 kb on - strand, within AO353_28295at 6169.035 kb on - strand, within AO353_28295at 6169.035 kb on - strand, within AO353_28295at 6169.260 kb on + strandat 6169.260 kb on + strandat 6169.261 kb on - strandat 6169.423 kb on - strand, within AO353_28300at 6169.605 kb on + strand, within AO353_28300at 6169.606 kb on - strand, within AO353_28300at 6169.682 kb on + strand, within AO353_28300at 6169.682 kb on + strand, within AO353_28300at 6169.683 kb on - strand, within AO353_28300at 6169.857 kb on + strand, within AO353_28300at 6169.857 kb on + strand, within AO353_28300at 6169.934 kb on - strandat 6169.934 kb on - strandat 6169.960 kb on + strandat 6169.960 kb on + strandat 6169.961 kb on - strandat 6169.961 kb on - strandat 6169.961 kb on - strandat 6169.961 kb on - strandat 6169.961 kb on - strandat 6169.961 kb on - strandat 6169.961 kb on - strandat 6170.056 kb on + strandat 6170.056 kb on + strandat 6170.057 kb on - strandat 6170.057 kb on - strandat 6170.069 kb on + strandat 6170.069 kb on + strandat 6170.070 kb on - strandat 6170.090 kb on + strandat 6170.090 kb on + strandat 6170.090 kb on + strandat 6170.091 kb on - strandat 6170.091 kb on - strandat 6170.091 kb on - strandat 6170.091 kb on - strandat 6170.091 kb on - strandat 6170.091 kb on - strandat 6170.091 kb on - strandat 6170.094 kb on + strandat 6170.095 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.125 vol%
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6,167,579 - AO353_28290 0.64 -1.0
6,167,579 - AO353_28290 0.64 +0.9
6,167,662 - AO353_28290 0.70 +0.0
6,167,766 + AO353_28290 0.77 +1.8
6,167,766 + AO353_28290 0.77 -1.1
6,167,766 + AO353_28290 0.77 -0.1
6,167,766 + AO353_28290 0.77 -0.5
6,167,766 + AO353_28290 0.77 +0.9
6,167,773 + AO353_28290 0.77 -0.5
6,167,774 - AO353_28290 0.77 +0.8
6,167,991 + -0.1
6,167,991 + -0.5
6,167,992 - +0.0
6,168,046 - -3.4
6,168,049 + +2.5
6,168,049 + +0.5
6,168,100 + -0.9
6,168,100 + -0.3
6,168,101 - +0.5
6,168,101 - +0.2
6,168,120 + -0.5
6,168,121 - -2.5
6,168,156 + +0.9
6,168,200 + +0.1
6,168,200 + +1.8
6,168,200 + +0.1
6,168,201 - -0.8
6,168,201 - -0.1
6,168,201 - +0.2
6,168,204 + -1.0
6,168,204 + -0.8
6,168,204 + +0.3
6,168,204 + -1.3
6,168,205 - -1.1
6,168,205 - +1.1
6,168,205 - +1.7
6,168,205 - +0.2
6,168,205 - +0.2
6,168,207 + +0.5
6,168,207 + +0.5
6,168,207 + -0.0
6,168,207 + +2.9
6,168,207 + -1.4
6,168,207 + +1.1
6,168,207 + -0.5
6,168,207 + +0.4
6,168,207 + -0.7
6,168,207 + +0.9
6,168,207 + +0.4
6,168,207 + +2.3
6,168,207 + -1.6
6,168,207 + +0.7
6,168,207 + -0.8
6,168,207 + -1.5
6,168,207 + -0.2
6,168,207 + -0.3
6,168,207 + +0.3
6,168,208 - +0.5
6,168,208 - -0.9
6,168,208 - -0.3
6,168,208 - +1.1
6,168,208 - -0.5
6,168,288 + +0.1
6,168,288 + +0.1
6,168,288 + -0.8
6,168,373 + +1.1
6,168,373 + -0.0
6,168,373 + -0.0
6,168,373 + -0.2
6,168,373 + +0.5
6,168,374 - -1.2
6,168,374 - +0.3
6,168,374 - -1.0
6,168,374 - -1.8
6,168,374 - +0.5
6,168,374 - -1.2
6,168,374 - -1.5
6,168,374 - +0.3
6,168,374 - +1.3
6,168,688 + AO353_28295 0.40 -0.5
6,168,950 - AO353_28295 0.70 -0.6
6,168,950 - AO353_28295 0.70 -0.3
6,169,035 - AO353_28295 0.80 -1.0
6,169,035 - AO353_28295 0.80 -0.5
6,169,260 + +0.5
6,169,260 + +0.4
6,169,261 - -0.3
6,169,423 - AO353_28300 0.24 -1.6
6,169,605 + AO353_28300 0.50 +0.5
6,169,606 - AO353_28300 0.50 +0.9
6,169,682 + AO353_28300 0.61 +0.5
6,169,682 + AO353_28300 0.61 -0.7
6,169,683 - AO353_28300 0.61 +0.1
6,169,857 + AO353_28300 0.85 +0.8
6,169,857 + AO353_28300 0.85 +0.5
6,169,934 - -1.6
6,169,934 - -1.5
6,169,960 + +0.5
6,169,960 + +0.5
6,169,961 - -2.6
6,169,961 - -1.5
6,169,961 - -0.7
6,169,961 - +0.5
6,169,961 - -0.5
6,169,961 - -1.2
6,169,961 - -0.2
6,170,056 + +0.4
6,170,056 + +0.1
6,170,057 - +0.5
6,170,057 - +0.3
6,170,069 + -1.0
6,170,069 + +0.3
6,170,070 - +1.5
6,170,090 + -2.9
6,170,090 + -0.0
6,170,090 + +1.5
6,170,091 - -0.5
6,170,091 - -1.2
6,170,091 - -1.4
6,170,091 - -0.6
6,170,091 - -0.1
6,170,091 - +0.4
6,170,091 - -0.5
6,170,094 + -0.4
6,170,095 - +0.5

Or see this region's nucleotide sequence