Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_28160

Experiment: Furfuryl Alcohol 0.125 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_28155 and AO353_28160 are separated by 237 nucleotidesAO353_28160 and AO353_28165 are separated by 45 nucleotidesAO353_28165 and AO353_28170 are separated by 19 nucleotides AO353_28155: AO353_28155 - LysR family transcriptional regulator, at 6,138,246 to 6,139,160 _28155 AO353_28160: AO353_28160 - amidohydrolase, at 6,139,398 to 6,140,573 _28160 AO353_28165: AO353_28165 - ABC transporter substrate-binding protein, at 6,140,619 to 6,141,398 _28165 AO353_28170: AO353_28170 - phytanoyl-CoA dioxygenase, at 6,141,418 to 6,142,257 _28170 Position (kb) 6139 6140 6141Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6138.535 kb on + strand, within AO353_28155at 6138.536 kb on - strand, within AO353_28155at 6138.685 kb on + strand, within AO353_28155at 6138.685 kb on + strand, within AO353_28155at 6138.685 kb on + strand, within AO353_28155at 6138.686 kb on - strand, within AO353_28155at 6138.686 kb on - strand, within AO353_28155at 6138.686 kb on - strand, within AO353_28155at 6138.714 kb on - strand, within AO353_28155at 6139.008 kb on - strand, within AO353_28155at 6139.053 kb on + strand, within AO353_28155at 6139.053 kb on + strand, within AO353_28155at 6139.054 kb on - strand, within AO353_28155at 6139.054 kb on - strand, within AO353_28155at 6139.150 kb on + strandat 6139.150 kb on + strandat 6139.150 kb on + strandat 6139.151 kb on - strandat 6139.151 kb on - strandat 6139.151 kb on - strandat 6139.160 kb on + strandat 6139.160 kb on + strandat 6139.160 kb on + strandat 6139.160 kb on + strandat 6139.161 kb on - strandat 6139.161 kb on - strandat 6139.211 kb on - strandat 6139.233 kb on + strandat 6139.233 kb on + strandat 6139.234 kb on - strandat 6139.234 kb on - strandat 6139.234 kb on - strandat 6139.332 kb on - strandat 6139.417 kb on + strandat 6139.418 kb on - strandat 6139.420 kb on + strandat 6139.421 kb on - strandat 6139.421 kb on - strandat 6139.421 kb on - strandat 6139.596 kb on - strand, within AO353_28160at 6139.643 kb on + strand, within AO353_28160at 6139.644 kb on - strand, within AO353_28160at 6139.744 kb on - strand, within AO353_28160at 6139.744 kb on - strand, within AO353_28160at 6139.744 kb on - strand, within AO353_28160at 6139.744 kb on - strand, within AO353_28160at 6139.744 kb on - strand, within AO353_28160at 6139.780 kb on + strand, within AO353_28160at 6139.780 kb on + strand, within AO353_28160at 6139.780 kb on + strand, within AO353_28160at 6139.781 kb on - strand, within AO353_28160at 6139.781 kb on - strand, within AO353_28160at 6139.781 kb on - strand, within AO353_28160at 6140.215 kb on + strand, within AO353_28160at 6140.271 kb on + strand, within AO353_28160at 6140.272 kb on - strand, within AO353_28160at 6140.363 kb on - strand, within AO353_28160at 6140.363 kb on - strand, within AO353_28160at 6140.363 kb on - strand, within AO353_28160at 6140.363 kb on - strand, within AO353_28160at 6140.363 kb on - strand, within AO353_28160at 6140.407 kb on - strand, within AO353_28160at 6140.603 kb on - strandat 6140.626 kb on + strandat 6140.626 kb on + strandat 6140.627 kb on - strandat 6140.627 kb on - strandat 6140.627 kb on - strandat 6140.640 kb on + strandat 6140.640 kb on + strandat 6140.640 kb on + strandat 6140.641 kb on - strandat 6140.641 kb on - strandat 6140.641 kb on - strandat 6140.641 kb on - strandat 6140.721 kb on + strand, within AO353_28165at 6140.722 kb on - strandat 6140.722 kb on - strand, within AO353_28165at 6140.758 kb on + strand, within AO353_28165at 6140.758 kb on + strand, within AO353_28165at 6140.758 kb on + strand, within AO353_28165at 6140.759 kb on - strand, within AO353_28165at 6140.759 kb on - strandat 6140.759 kb on - strand, within AO353_28165at 6140.759 kb on - strand, within AO353_28165at 6140.804 kb on - strand, within AO353_28165at 6140.804 kb on - strand, within AO353_28165at 6140.936 kb on + strand, within AO353_28165at 6140.937 kb on - strand, within AO353_28165at 6140.943 kb on + strand, within AO353_28165at 6140.943 kb on + strand, within AO353_28165at 6140.943 kb on + strand, within AO353_28165at 6140.943 kb on + strand, within AO353_28165at 6140.943 kb on + strand, within AO353_28165at 6141.348 kb on + strandat 6141.348 kb on + strandat 6141.349 kb on - strandat 6141.369 kb on + strandat 6141.383 kb on + strandat 6141.383 kb on + strandat 6141.383 kb on + strandat 6141.384 kb on - strandat 6141.384 kb on - strandat 6141.384 kb on - strandat 6141.384 kb on - strandat 6141.384 kb on - strandat 6141.388 kb on - strandat 6141.388 kb on - strandat 6141.388 kb on - strandat 6141.388 kb on - strandat 6141.388 kb on - strandat 6141.401 kb on + strandat 6141.401 kb on + strandat 6141.401 kb on + strandat 6141.402 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.125 vol%
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6,138,535 + AO353_28155 0.32 -0.3
6,138,536 - AO353_28155 0.32 +0.5
6,138,685 + AO353_28155 0.48 +0.1
6,138,685 + AO353_28155 0.48 -1.0
6,138,685 + AO353_28155 0.48 +0.3
6,138,686 - AO353_28155 0.48 +0.4
6,138,686 - AO353_28155 0.48 -0.2
6,138,686 - AO353_28155 0.48 +0.8
6,138,714 - AO353_28155 0.51 -1.2
6,139,008 - AO353_28155 0.83 -0.3
6,139,053 + AO353_28155 0.88 -0.1
6,139,053 + AO353_28155 0.88 +1.3
6,139,054 - AO353_28155 0.88 -1.0
6,139,054 - AO353_28155 0.88 -0.6
6,139,150 + +1.5
6,139,150 + -0.8
6,139,150 + -1.0
6,139,151 - -1.8
6,139,151 - -0.3
6,139,151 - -1.6
6,139,160 + +0.1
6,139,160 + +0.4
6,139,160 + +0.7
6,139,160 + +1.1
6,139,161 - +1.0
6,139,161 - +0.2
6,139,211 - -1.8
6,139,233 + -0.2
6,139,233 + +0.7
6,139,234 - +0.1
6,139,234 - +1.1
6,139,234 - -0.3
6,139,332 - -1.2
6,139,417 + -0.8
6,139,418 - +1.7
6,139,420 + -0.8
6,139,421 - +1.5
6,139,421 - -0.5
6,139,421 - -0.7
6,139,596 - AO353_28160 0.17 +0.3
6,139,643 + AO353_28160 0.21 +0.5
6,139,644 - AO353_28160 0.21 -1.0
6,139,744 - AO353_28160 0.29 +0.1
6,139,744 - AO353_28160 0.29 +0.3
6,139,744 - AO353_28160 0.29 -1.8
6,139,744 - AO353_28160 0.29 -0.5
6,139,744 - AO353_28160 0.29 +0.9
6,139,780 + AO353_28160 0.32 +0.4
6,139,780 + AO353_28160 0.32 -2.5
6,139,780 + AO353_28160 0.32 -2.0
6,139,781 - AO353_28160 0.33 -1.0
6,139,781 - AO353_28160 0.33 +1.1
6,139,781 - AO353_28160 0.33 -1.8
6,140,215 + AO353_28160 0.69 -2.8
6,140,271 + AO353_28160 0.74 -0.1
6,140,272 - AO353_28160 0.74 -0.2
6,140,363 - AO353_28160 0.82 -1.0
6,140,363 - AO353_28160 0.82 -0.3
6,140,363 - AO353_28160 0.82 -1.8
6,140,363 - AO353_28160 0.82 -0.2
6,140,363 - AO353_28160 0.82 -1.0
6,140,407 - AO353_28160 0.86 -1.9
6,140,603 - +1.6
6,140,626 + -0.2
6,140,626 + -0.8
6,140,627 - -0.4
6,140,627 - -0.7
6,140,627 - -0.9
6,140,640 + -0.5
6,140,640 + +0.4
6,140,640 + -0.7
6,140,641 - +1.7
6,140,641 - -0.3
6,140,641 - +0.8
6,140,641 - -0.6
6,140,721 + AO353_28165 0.13 +1.0
6,140,722 - +1.6
6,140,722 - AO353_28165 0.13 -0.6
6,140,758 + AO353_28165 0.18 +1.8
6,140,758 + AO353_28165 0.18 -0.0
6,140,758 + AO353_28165 0.18 -0.3
6,140,759 - AO353_28165 0.18 +0.1
6,140,759 - -0.4
6,140,759 - AO353_28165 0.18 -0.8
6,140,759 - AO353_28165 0.18 +2.5
6,140,804 - AO353_28165 0.24 +0.1
6,140,804 - AO353_28165 0.24 -0.9
6,140,936 + AO353_28165 0.41 +2.6
6,140,937 - AO353_28165 0.41 +2.1
6,140,943 + AO353_28165 0.42 -1.8
6,140,943 + AO353_28165 0.42 +0.1
6,140,943 + AO353_28165 0.42 -0.1
6,140,943 + AO353_28165 0.42 +0.6
6,140,943 + AO353_28165 0.42 -0.5
6,141,348 + -2.3
6,141,348 + -0.4
6,141,349 - -0.3
6,141,369 + +1.4
6,141,383 + +0.9
6,141,383 + -0.2
6,141,383 + -0.3
6,141,384 - -0.2
6,141,384 - -1.6
6,141,384 - -0.4
6,141,384 - -0.5
6,141,384 - +0.6
6,141,388 - +0.1
6,141,388 - -1.8
6,141,388 - +1.1
6,141,388 - -1.6
6,141,388 - -0.4
6,141,401 + -0.6
6,141,401 + +0.1
6,141,401 + +0.6
6,141,402 - -2.0

Or see this region's nucleotide sequence