Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_27710

Experiment: Furfuryl Alcohol 0.125 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_27705 and AO353_27710 overlap by 4 nucleotidesAO353_27710 and AO353_27715 are separated by 137 nucleotides AO353_27705: AO353_27705 - tRNA 2-thiouridylase, at 6,039,557 to 6,040,690 _27705 AO353_27710: AO353_27710 - DNA repair protein, at 6,040,687 to 6,041,310 _27710 AO353_27715: AO353_27715 - adenylosuccinate lyase, at 6,041,448 to 6,042,818 _27715 Position (kb) 6040 6041 6042Strain fitness (log2 ratio) -2 -1 0 1at 6040.757 kb on + strand, within AO353_27710at 6040.758 kb on - strand, within AO353_27710at 6040.861 kb on - strand, within AO353_27710at 6041.092 kb on + strand, within AO353_27710at 6041.343 kb on + strandat 6041.344 kb on - strandat 6041.344 kb on - strandat 6041.344 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.125 vol%
remove
6,040,757 + AO353_27710 0.11 -0.9
6,040,758 - AO353_27710 0.11 +1.1
6,040,861 - AO353_27710 0.28 +0.9
6,041,092 + AO353_27710 0.65 -2.0
6,041,343 + +0.0
6,041,344 - +0.2
6,041,344 - -0.8
6,041,344 - +0.5

Or see this region's nucleotide sequence