Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23525

Experiment: Furfuryl Alcohol 0.125 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_23515 and AO353_23520 are separated by 10 nucleotidesAO353_23520 and AO353_23525 are separated by 51 nucleotidesAO353_23525 and AO353_23530 are separated by 154 nucleotides AO353_23515: AO353_23515 - muconate cycloisomerase, at 5,150,583 to 5,151,731 _23515 AO353_23520: AO353_23520 - muconolactone delta-isomerase, at 5,151,742 to 5,152,032 _23520 AO353_23525: AO353_23525 - Catechol 1,2-dioxygenase (EC 1.13.11.1) (from data), at 5,152,084 to 5,153,013 _23525 AO353_23530: AO353_23530 - AraC family transcriptional regulator, at 5,153,168 to 5,154,124 _23530 Position (kb) 5152 5153 5154Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5151.755 kb on + strandat 5151.756 kb on - strandat 5151.756 kb on - strandat 5151.756 kb on - strandat 5151.898 kb on + strand, within AO353_23520at 5151.898 kb on + strand, within AO353_23520at 5151.898 kb on + strand, within AO353_23520at 5151.898 kb on + strand, within AO353_23520at 5151.899 kb on - strand, within AO353_23520at 5151.899 kb on - strand, within AO353_23520at 5151.899 kb on - strand, within AO353_23520at 5151.967 kb on + strand, within AO353_23520at 5151.967 kb on + strand, within AO353_23520at 5151.967 kb on + strand, within AO353_23520at 5151.968 kb on - strand, within AO353_23520at 5151.968 kb on - strand, within AO353_23520at 5151.968 kb on - strand, within AO353_23520at 5151.968 kb on - strand, within AO353_23520at 5151.968 kb on - strand, within AO353_23520at 5152.011 kb on + strandat 5152.054 kb on - strandat 5152.058 kb on + strandat 5152.058 kb on + strandat 5152.059 kb on - strandat 5152.061 kb on + strandat 5152.061 kb on + strandat 5152.062 kb on - strandat 5152.062 kb on - strandat 5152.065 kb on + strandat 5152.065 kb on + strandat 5152.065 kb on + strandat 5152.065 kb on + strandat 5152.065 kb on + strandat 5152.066 kb on - strandat 5152.080 kb on - strandat 5152.186 kb on + strand, within AO353_23525at 5152.187 kb on - strand, within AO353_23525at 5152.264 kb on + strand, within AO353_23525at 5152.265 kb on - strand, within AO353_23525at 5152.330 kb on + strand, within AO353_23525at 5152.331 kb on - strand, within AO353_23525at 5152.331 kb on - strand, within AO353_23525at 5152.331 kb on - strand, within AO353_23525at 5152.372 kb on - strand, within AO353_23525at 5152.411 kb on + strand, within AO353_23525at 5152.412 kb on - strand, within AO353_23525at 5152.570 kb on + strand, within AO353_23525at 5152.570 kb on + strand, within AO353_23525at 5152.570 kb on + strand, within AO353_23525at 5152.570 kb on + strand, within AO353_23525at 5152.570 kb on + strand, within AO353_23525at 5152.571 kb on - strand, within AO353_23525at 5152.571 kb on - strand, within AO353_23525at 5152.576 kb on + strand, within AO353_23525at 5152.577 kb on - strand, within AO353_23525at 5152.577 kb on - strand, within AO353_23525at 5152.816 kb on + strand, within AO353_23525at 5152.816 kb on + strand, within AO353_23525at 5152.816 kb on + strand, within AO353_23525at 5152.817 kb on - strand, within AO353_23525at 5152.817 kb on - strand, within AO353_23525at 5152.817 kb on - strand, within AO353_23525at 5152.817 kb on - strand, within AO353_23525at 5153.050 kb on + strandat 5153.050 kb on + strandat 5153.051 kb on - strandat 5153.051 kb on - strandat 5153.084 kb on + strandat 5153.084 kb on + strandat 5153.084 kb on + strandat 5153.084 kb on + strandat 5153.084 kb on + strandat 5153.084 kb on + strandat 5153.085 kb on - strandat 5153.085 kb on - strandat 5153.085 kb on - strandat 5153.181 kb on + strandat 5153.181 kb on + strandat 5153.181 kb on + strandat 5153.181 kb on + strandat 5153.181 kb on + strandat 5153.181 kb on + strandat 5153.181 kb on + strandat 5153.182 kb on - strandat 5153.182 kb on - strandat 5153.182 kb on - strandat 5153.182 kb on - strandat 5153.182 kb on - strandat 5153.237 kb on + strandat 5153.238 kb on - strandat 5153.349 kb on - strand, within AO353_23530at 5153.349 kb on - strand, within AO353_23530at 5153.349 kb on - strand, within AO353_23530at 5153.349 kb on - strand, within AO353_23530at 5153.349 kb on - strand, within AO353_23530at 5153.393 kb on + strand, within AO353_23530at 5153.393 kb on + strand, within AO353_23530at 5153.393 kb on + strand, within AO353_23530at 5153.393 kb on + strand, within AO353_23530at 5153.393 kb on + strand, within AO353_23530at 5153.393 kb on + strand, within AO353_23530at 5153.393 kb on + strand, within AO353_23530at 5153.394 kb on - strand, within AO353_23530at 5153.394 kb on - strand, within AO353_23530at 5153.394 kb on - strand, within AO353_23530at 5153.394 kb on - strand, within AO353_23530at 5153.394 kb on - strand, within AO353_23530at 5153.394 kb on - strand, within AO353_23530at 5153.394 kb on - strand, within AO353_23530at 5153.394 kb on - strand, within AO353_23530at 5153.394 kb on - strand, within AO353_23530at 5153.453 kb on + strand, within AO353_23530at 5153.453 kb on + strand, within AO353_23530at 5153.454 kb on - strand, within AO353_23530at 5153.454 kb on - strand, within AO353_23530at 5153.454 kb on - strand, within AO353_23530at 5153.510 kb on + strand, within AO353_23530at 5153.511 kb on - strand, within AO353_23530at 5153.511 kb on - strand, within AO353_23530at 5153.511 kb on - strand, within AO353_23530at 5153.511 kb on - strand, within AO353_23530at 5153.723 kb on + strand, within AO353_23530at 5153.723 kb on + strand, within AO353_23530at 5153.723 kb on + strand, within AO353_23530at 5153.723 kb on + strand, within AO353_23530at 5153.724 kb on - strand, within AO353_23530at 5153.724 kb on - strand, within AO353_23530at 5153.825 kb on + strand, within AO353_23530at 5153.825 kb on + strand, within AO353_23530at 5153.825 kb on + strand, within AO353_23530at 5153.826 kb on - strand, within AO353_23530at 5153.826 kb on - strand, within AO353_23530at 5153.826 kb on - strand, within AO353_23530at 5153.903 kb on + strand, within AO353_23530at 5153.904 kb on - strand, within AO353_23530at 5153.904 kb on - strand, within AO353_23530at 5153.904 kb on - strand, within AO353_23530at 5153.945 kb on + strand, within AO353_23530at 5153.945 kb on + strand, within AO353_23530at 5153.945 kb on + strand, within AO353_23530at 5153.946 kb on - strand, within AO353_23530at 5154.007 kb on - strand, within AO353_23530at 5154.007 kb on - strand, within AO353_23530at 5154.007 kb on - strand, within AO353_23530at 5154.007 kb on - strand, within AO353_23530at 5154.007 kb on - strand, within AO353_23530at 5154.007 kb on - strand, within AO353_23530at 5154.010 kb on + strand, within AO353_23530at 5154.010 kb on + strand, within AO353_23530at 5154.010 kb on + strand, within AO353_23530at 5154.011 kb on - strand, within AO353_23530at 5154.011 kb on - strand, within AO353_23530at 5154.011 kb on - strand, within AO353_23530at 5154.011 kb on - strand, within AO353_23530

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.125 vol%
remove
5,151,755 + +1.5
5,151,756 - -0.7
5,151,756 - -0.8
5,151,756 - +1.2
5,151,898 + AO353_23520 0.54 -0.1
5,151,898 + AO353_23520 0.54 -0.5
5,151,898 + AO353_23520 0.54 +0.0
5,151,898 + AO353_23520 0.54 +0.1
5,151,899 - AO353_23520 0.54 +1.7
5,151,899 - AO353_23520 0.54 +0.0
5,151,899 - AO353_23520 0.54 +1.5
5,151,967 + AO353_23520 0.77 +2.1
5,151,967 + AO353_23520 0.77 -1.7
5,151,967 + AO353_23520 0.77 +0.5
5,151,968 - AO353_23520 0.78 -0.8
5,151,968 - AO353_23520 0.78 -2.5
5,151,968 - AO353_23520 0.78 -1.5
5,151,968 - AO353_23520 0.78 -0.2
5,151,968 - AO353_23520 0.78 +0.9
5,152,011 + +0.2
5,152,054 - +0.5
5,152,058 + -0.4
5,152,058 + -0.7
5,152,059 - +2.1
5,152,061 + -1.8
5,152,061 + -0.5
5,152,062 - +0.3
5,152,062 - -0.7
5,152,065 + +1.4
5,152,065 + +1.7
5,152,065 + -1.3
5,152,065 + -0.5
5,152,065 + +0.5
5,152,066 - -0.5
5,152,080 - -0.9
5,152,186 + AO353_23525 0.11 -0.1
5,152,187 - AO353_23525 0.11 -0.9
5,152,264 + AO353_23525 0.19 -1.3
5,152,265 - AO353_23525 0.19 +1.8
5,152,330 + AO353_23525 0.26 +0.3
5,152,331 - AO353_23525 0.27 -0.2
5,152,331 - AO353_23525 0.27 +1.1
5,152,331 - AO353_23525 0.27 -0.4
5,152,372 - AO353_23525 0.31 -0.8
5,152,411 + AO353_23525 0.35 -1.1
5,152,412 - AO353_23525 0.35 -0.6
5,152,570 + AO353_23525 0.52 -0.3
5,152,570 + AO353_23525 0.52 -1.2
5,152,570 + AO353_23525 0.52 -1.5
5,152,570 + AO353_23525 0.52 -0.4
5,152,570 + AO353_23525 0.52 +1.6
5,152,571 - AO353_23525 0.52 +1.5
5,152,571 - AO353_23525 0.52 -0.8
5,152,576 + AO353_23525 0.53 -1.3
5,152,577 - AO353_23525 0.53 -0.9
5,152,577 - AO353_23525 0.53 -0.1
5,152,816 + AO353_23525 0.79 +0.1
5,152,816 + AO353_23525 0.79 -0.8
5,152,816 + AO353_23525 0.79 +2.1
5,152,817 - AO353_23525 0.79 -0.8
5,152,817 - AO353_23525 0.79 +0.2
5,152,817 - AO353_23525 0.79 -0.9
5,152,817 - AO353_23525 0.79 +0.0
5,153,050 + -0.2
5,153,050 + -1.0
5,153,051 - -1.8
5,153,051 - +0.5
5,153,084 + -0.5
5,153,084 + +0.3
5,153,084 + +0.1
5,153,084 + +0.8
5,153,084 + -0.9
5,153,084 + +0.9
5,153,085 - -0.1
5,153,085 - -0.2
5,153,085 - -0.5
5,153,181 + -0.5
5,153,181 + -0.2
5,153,181 + -0.8
5,153,181 + +0.9
5,153,181 + +1.4
5,153,181 + +1.1
5,153,181 + -0.2
5,153,182 - +1.0
5,153,182 - -0.1
5,153,182 - -1.1
5,153,182 - -2.3
5,153,182 - +1.1
5,153,237 + -0.5
5,153,238 - -1.1
5,153,349 - AO353_23530 0.19 +1.5
5,153,349 - AO353_23530 0.19 +0.5
5,153,349 - AO353_23530 0.19 +0.8
5,153,349 - AO353_23530 0.19 +0.7
5,153,349 - AO353_23530 0.19 -0.1
5,153,393 + AO353_23530 0.24 -0.5
5,153,393 + AO353_23530 0.24 +1.5
5,153,393 + AO353_23530 0.24 -0.3
5,153,393 + AO353_23530 0.24 -0.5
5,153,393 + AO353_23530 0.24 +0.5
5,153,393 + AO353_23530 0.24 +0.2
5,153,393 + AO353_23530 0.24 -0.2
5,153,394 - AO353_23530 0.24 -0.5
5,153,394 - AO353_23530 0.24 -1.1
5,153,394 - AO353_23530 0.24 +0.2
5,153,394 - AO353_23530 0.24 -0.3
5,153,394 - AO353_23530 0.24 +1.3
5,153,394 - AO353_23530 0.24 -1.7
5,153,394 - AO353_23530 0.24 -1.5
5,153,394 - AO353_23530 0.24 +0.5
5,153,394 - AO353_23530 0.24 +0.2
5,153,453 + AO353_23530 0.30 -0.1
5,153,453 + AO353_23530 0.30 +1.5
5,153,454 - AO353_23530 0.30 -0.9
5,153,454 - AO353_23530 0.30 -0.2
5,153,454 - AO353_23530 0.30 -1.4
5,153,510 + AO353_23530 0.36 +0.5
5,153,511 - AO353_23530 0.36 -1.0
5,153,511 - AO353_23530 0.36 +0.2
5,153,511 - AO353_23530 0.36 -0.2
5,153,511 - AO353_23530 0.36 -1.1
5,153,723 + AO353_23530 0.58 +0.1
5,153,723 + AO353_23530 0.58 +0.7
5,153,723 + AO353_23530 0.58 +0.3
5,153,723 + AO353_23530 0.58 -0.2
5,153,724 - AO353_23530 0.58 -1.8
5,153,724 - AO353_23530 0.58 +0.9
5,153,825 + AO353_23530 0.69 -0.3
5,153,825 + AO353_23530 0.69 +0.9
5,153,825 + AO353_23530 0.69 +0.9
5,153,826 - AO353_23530 0.69 +0.7
5,153,826 - AO353_23530 0.69 -0.5
5,153,826 - AO353_23530 0.69 +1.1
5,153,903 + AO353_23530 0.77 -0.8
5,153,904 - AO353_23530 0.77 -0.7
5,153,904 - AO353_23530 0.77 -2.2
5,153,904 - AO353_23530 0.77 -0.8
5,153,945 + AO353_23530 0.81 +1.9
5,153,945 + AO353_23530 0.81 -0.5
5,153,945 + AO353_23530 0.81 +0.9
5,153,946 - AO353_23530 0.81 +1.5
5,154,007 - AO353_23530 0.88 -0.5
5,154,007 - AO353_23530 0.88 +0.5
5,154,007 - AO353_23530 0.88 -0.4
5,154,007 - AO353_23530 0.88 +1.1
5,154,007 - AO353_23530 0.88 +0.8
5,154,007 - AO353_23530 0.88 -1.4
5,154,010 + AO353_23530 0.88 +1.5
5,154,010 + AO353_23530 0.88 -0.9
5,154,010 + AO353_23530 0.88 +2.5
5,154,011 - AO353_23530 0.88 +0.3
5,154,011 - AO353_23530 0.88 +0.5
5,154,011 - AO353_23530 0.88 -0.5
5,154,011 - AO353_23530 0.88 -2.8

Or see this region's nucleotide sequence