Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22735

Experiment: Furfuryl Alcohol 0.125 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_22725 and AO353_22730 overlap by 4 nucleotidesAO353_22730 and AO353_22735 are separated by 208 nucleotidesAO353_22735 and AO353_22740 are separated by 77 nucleotides AO353_22725: AO353_22725 - hypothetical protein, at 4,977,308 to 4,977,679 _22725 AO353_22730: AO353_22730 - hypothetical protein, at 4,977,676 to 4,978,335 _22730 AO353_22735: AO353_22735 - hypothetical protein, at 4,978,544 to 4,978,783 _22735 AO353_22740: AO353_22740 - sterol desaturase, at 4,978,861 to 4,980,015 _22740 Position (kb) 4978 4979Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4977.554 kb on + strand, within AO353_22725at 4977.554 kb on + strand, within AO353_22725at 4977.554 kb on + strand, within AO353_22725at 4977.555 kb on - strand, within AO353_22725at 4977.632 kb on + strand, within AO353_22725at 4977.632 kb on + strand, within AO353_22725at 4977.632 kb on + strand, within AO353_22725at 4977.632 kb on + strand, within AO353_22725at 4977.632 kb on + strand, within AO353_22725at 4977.632 kb on + strand, within AO353_22725at 4977.632 kb on + strand, within AO353_22725at 4977.632 kb on + strand, within AO353_22725at 4977.632 kb on + strand, within AO353_22725at 4977.761 kb on - strand, within AO353_22730at 4977.769 kb on + strand, within AO353_22730at 4977.770 kb on - strand, within AO353_22730at 4977.770 kb on - strand, within AO353_22730at 4977.770 kb on - strand, within AO353_22730at 4977.841 kb on + strand, within AO353_22730at 4977.841 kb on + strand, within AO353_22730at 4977.842 kb on - strand, within AO353_22730at 4977.842 kb on - strand, within AO353_22730at 4977.842 kb on - strand, within AO353_22730at 4977.861 kb on + strand, within AO353_22730at 4977.861 kb on + strand, within AO353_22730at 4977.861 kb on + strand, within AO353_22730at 4977.861 kb on + strand, within AO353_22730at 4977.866 kb on - strand, within AO353_22730at 4977.886 kb on + strand, within AO353_22730at 4977.889 kb on + strand, within AO353_22730at 4977.889 kb on + strand, within AO353_22730at 4977.889 kb on + strand, within AO353_22730at 4977.889 kb on + strand, within AO353_22730at 4977.890 kb on - strand, within AO353_22730at 4977.890 kb on - strand, within AO353_22730at 4977.890 kb on - strand, within AO353_22730at 4977.890 kb on - strand, within AO353_22730at 4977.890 kb on - strand, within AO353_22730at 4977.890 kb on - strand, within AO353_22730at 4977.890 kb on - strand, within AO353_22730at 4978.012 kb on + strand, within AO353_22730at 4978.012 kb on + strand, within AO353_22730at 4978.013 kb on - strand, within AO353_22730at 4978.013 kb on - strand, within AO353_22730at 4978.013 kb on - strand, within AO353_22730at 4978.017 kb on + strand, within AO353_22730at 4978.030 kb on + strand, within AO353_22730at 4978.030 kb on + strand, within AO353_22730at 4978.031 kb on - strandat 4978.042 kb on + strand, within AO353_22730at 4978.042 kb on + strand, within AO353_22730at 4978.042 kb on + strand, within AO353_22730at 4978.042 kb on + strand, within AO353_22730at 4978.043 kb on - strand, within AO353_22730at 4978.043 kb on - strand, within AO353_22730at 4978.043 kb on - strand, within AO353_22730at 4978.043 kb on - strand, within AO353_22730at 4978.043 kb on - strand, within AO353_22730at 4978.300 kb on + strandat 4978.321 kb on + strandat 4978.322 kb on - strandat 4978.322 kb on - strandat 4978.385 kb on + strandat 4978.385 kb on + strandat 4978.386 kb on - strandat 4978.453 kb on + strandat 4978.454 kb on - strandat 4978.565 kb on + strandat 4978.566 kb on - strandat 4978.646 kb on + strand, within AO353_22735at 4978.646 kb on + strand, within AO353_22735at 4978.646 kb on + strand, within AO353_22735at 4978.647 kb on - strand, within AO353_22735at 4978.647 kb on - strand, within AO353_22735at 4978.860 kb on - strandat 4979.054 kb on + strand, within AO353_22740at 4979.054 kb on + strand, within AO353_22740at 4979.055 kb on - strand, within AO353_22740at 4979.055 kb on - strand, within AO353_22740at 4979.120 kb on + strand, within AO353_22740at 4979.121 kb on - strand, within AO353_22740at 4979.121 kb on - strand, within AO353_22740at 4979.121 kb on - strand, within AO353_22740at 4979.121 kb on - strandat 4979.121 kb on - strand, within AO353_22740at 4979.379 kb on - strand, within AO353_22740at 4979.396 kb on + strand, within AO353_22740at 4979.396 kb on + strand, within AO353_22740at 4979.396 kb on + strand, within AO353_22740at 4979.397 kb on - strand, within AO353_22740at 4979.467 kb on + strand, within AO353_22740at 4979.549 kb on + strand, within AO353_22740at 4979.559 kb on - strandat 4979.708 kb on + strand, within AO353_22740at 4979.708 kb on + strand, within AO353_22740at 4979.708 kb on + strand, within AO353_22740at 4979.762 kb on + strand, within AO353_22740

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.125 vol%
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4,977,554 + AO353_22725 0.66 -0.1
4,977,554 + AO353_22725 0.66 +0.5
4,977,554 + AO353_22725 0.66 +0.8
4,977,555 - AO353_22725 0.66 +1.4
4,977,632 + AO353_22725 0.87 -0.3
4,977,632 + AO353_22725 0.87 +1.0
4,977,632 + AO353_22725 0.87 -0.2
4,977,632 + AO353_22725 0.87 -0.1
4,977,632 + AO353_22725 0.87 -0.1
4,977,632 + AO353_22725 0.87 -2.2
4,977,632 + AO353_22725 0.87 +1.7
4,977,632 + AO353_22725 0.87 +0.1
4,977,632 + AO353_22725 0.87 -1.7
4,977,761 - AO353_22730 0.13 -1.3
4,977,769 + AO353_22730 0.14 -0.1
4,977,770 - AO353_22730 0.14 +0.3
4,977,770 - AO353_22730 0.14 +0.0
4,977,770 - AO353_22730 0.14 +0.4
4,977,841 + AO353_22730 0.25 +2.1
4,977,841 + AO353_22730 0.25 +1.5
4,977,842 - AO353_22730 0.25 -1.1
4,977,842 - AO353_22730 0.25 +0.5
4,977,842 - AO353_22730 0.25 -0.8
4,977,861 + AO353_22730 0.28 +1.1
4,977,861 + AO353_22730 0.28 -0.2
4,977,861 + AO353_22730 0.28 +0.0
4,977,861 + AO353_22730 0.28 -1.5
4,977,866 - AO353_22730 0.29 +0.2
4,977,886 + AO353_22730 0.32 -0.4
4,977,889 + AO353_22730 0.32 -1.5
4,977,889 + AO353_22730 0.32 -0.1
4,977,889 + AO353_22730 0.32 -0.1
4,977,889 + AO353_22730 0.32 +1.2
4,977,890 - AO353_22730 0.32 +0.5
4,977,890 - AO353_22730 0.32 -1.3
4,977,890 - AO353_22730 0.32 +0.1
4,977,890 - AO353_22730 0.32 +1.3
4,977,890 - AO353_22730 0.32 -0.2
4,977,890 - AO353_22730 0.32 -0.2
4,977,890 - AO353_22730 0.32 -0.5
4,978,012 + AO353_22730 0.51 +0.4
4,978,012 + AO353_22730 0.51 +0.2
4,978,013 - AO353_22730 0.51 +0.5
4,978,013 - AO353_22730 0.51 +0.4
4,978,013 - AO353_22730 0.51 -1.9
4,978,017 + AO353_22730 0.52 +0.8
4,978,030 + AO353_22730 0.54 -2.8
4,978,030 + AO353_22730 0.54 -0.9
4,978,031 - -0.5
4,978,042 + AO353_22730 0.55 +0.1
4,978,042 + AO353_22730 0.55 -0.1
4,978,042 + AO353_22730 0.55 -0.3
4,978,042 + AO353_22730 0.55 +0.5
4,978,043 - AO353_22730 0.56 +0.7
4,978,043 - AO353_22730 0.56 -1.4
4,978,043 - AO353_22730 0.56 -1.5
4,978,043 - AO353_22730 0.56 -1.1
4,978,043 - AO353_22730 0.56 -0.7
4,978,300 + -0.2
4,978,321 + -0.2
4,978,322 - -0.0
4,978,322 - -2.9
4,978,385 + +0.5
4,978,385 + +1.5
4,978,386 - +0.8
4,978,453 + +1.8
4,978,454 - -0.5
4,978,565 + -0.2
4,978,566 - -1.1
4,978,646 + AO353_22735 0.42 -1.5
4,978,646 + AO353_22735 0.42 -0.8
4,978,646 + AO353_22735 0.42 -2.3
4,978,647 - AO353_22735 0.43 -0.9
4,978,647 - AO353_22735 0.43 -0.2
4,978,860 - +0.4
4,979,054 + AO353_22740 0.17 -0.1
4,979,054 + AO353_22740 0.17 +1.1
4,979,055 - AO353_22740 0.17 +0.1
4,979,055 - AO353_22740 0.17 +0.2
4,979,120 + AO353_22740 0.22 -1.2
4,979,121 - AO353_22740 0.23 +0.1
4,979,121 - AO353_22740 0.23 -0.5
4,979,121 - AO353_22740 0.23 -1.1
4,979,121 - +2.1
4,979,121 - AO353_22740 0.23 -0.8
4,979,379 - AO353_22740 0.45 +0.5
4,979,396 + AO353_22740 0.46 +0.2
4,979,396 + AO353_22740 0.46 -2.1
4,979,396 + AO353_22740 0.46 -0.1
4,979,397 - AO353_22740 0.46 -0.8
4,979,467 + AO353_22740 0.52 -0.1
4,979,549 + AO353_22740 0.60 +0.7
4,979,559 - +1.5
4,979,708 + AO353_22740 0.73 -0.2
4,979,708 + AO353_22740 0.73 -0.3
4,979,708 + AO353_22740 0.73 -0.2
4,979,762 + AO353_22740 0.78 +1.0

Or see this region's nucleotide sequence