Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21355

Experiment: Furfuryl Alcohol 0.125 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21350 and AO353_21355 are separated by 27 nucleotidesAO353_21355 and AO353_21360 are separated by 133 nucleotides AO353_21350: AO353_21350 - methylmalonate-semialdehyde dehydrogenase, at 4,673,010 to 4,674,512 _21350 AO353_21355: AO353_21355 - xylose isomerase, at 4,674,540 to 4,675,361 _21355 AO353_21360: AO353_21360 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) (from data), at 4,675,495 to 4,677,426 _21360 Position (kb) 4674 4675 4676Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4673.712 kb on + strand, within AO353_21350at 4673.713 kb on - strand, within AO353_21350at 4674.153 kb on + strand, within AO353_21350at 4674.153 kb on + strand, within AO353_21350at 4674.153 kb on + strand, within AO353_21350at 4674.153 kb on + strand, within AO353_21350at 4674.154 kb on - strand, within AO353_21350at 4674.331 kb on + strand, within AO353_21350at 4674.331 kb on + strand, within AO353_21350at 4674.332 kb on - strand, within AO353_21350at 4674.405 kb on + strandat 4674.405 kb on + strandat 4674.406 kb on - strandat 4674.406 kb on - strandat 4674.429 kb on + strandat 4674.429 kb on + strandat 4674.430 kb on - strandat 4674.430 kb on - strandat 4674.510 kb on + strandat 4674.510 kb on + strandat 4674.510 kb on + strandat 4674.510 kb on + strandat 4674.510 kb on + strandat 4674.510 kb on + strandat 4674.511 kb on - strandat 4674.511 kb on - strandat 4674.538 kb on + strandat 4674.538 kb on + strandat 4674.539 kb on - strandat 4674.572 kb on + strandat 4674.573 kb on - strandat 4674.811 kb on - strand, within AO353_21355at 4674.906 kb on - strand, within AO353_21355at 4674.942 kb on + strand, within AO353_21355at 4675.238 kb on - strand, within AO353_21355at 4675.363 kb on + strandat 4675.412 kb on + strandat 4675.412 kb on + strandat 4675.481 kb on + strandat 4675.481 kb on + strandat 4675.481 kb on + strandat 4675.481 kb on + strandat 4675.481 kb on + strandat 4675.482 kb on - strandat 4675.482 kb on - strandat 4675.482 kb on - strandat 4675.482 kb on - strandat 4675.552 kb on + strandat 4675.552 kb on + strandat 4675.552 kb on + strandat 4675.552 kb on + strandat 4675.552 kb on + strandat 4675.552 kb on + strandat 4675.553 kb on - strandat 4675.553 kb on - strandat 4675.553 kb on - strandat 4675.747 kb on + strand, within AO353_21360at 4675.747 kb on + strand, within AO353_21360at 4675.747 kb on + strand, within AO353_21360at 4675.747 kb on + strand, within AO353_21360at 4675.747 kb on + strand, within AO353_21360at 4675.747 kb on + strand, within AO353_21360at 4675.748 kb on - strand, within AO353_21360at 4675.748 kb on - strand, within AO353_21360at 4675.748 kb on - strand, within AO353_21360at 4675.748 kb on - strand, within AO353_21360at 4675.835 kb on + strand, within AO353_21360at 4675.948 kb on + strand, within AO353_21360at 4675.948 kb on + strand, within AO353_21360at 4676.078 kb on - strand, within AO353_21360at 4676.078 kb on - strand, within AO353_21360at 4676.092 kb on + strand, within AO353_21360at 4676.092 kb on + strand, within AO353_21360at 4676.093 kb on - strand, within AO353_21360at 4676.218 kb on + strand, within AO353_21360

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.125 vol%
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4,673,712 + AO353_21350 0.47 +0.3
4,673,713 - AO353_21350 0.47 -0.4
4,674,153 + AO353_21350 0.76 -1.0
4,674,153 + AO353_21350 0.76 -0.1
4,674,153 + AO353_21350 0.76 +1.9
4,674,153 + AO353_21350 0.76 -1.0
4,674,154 - AO353_21350 0.76 -0.4
4,674,331 + AO353_21350 0.88 -0.0
4,674,331 + AO353_21350 0.88 +1.0
4,674,332 - AO353_21350 0.88 -0.8
4,674,405 + -0.5
4,674,405 + -0.3
4,674,406 - -1.0
4,674,406 - +0.7
4,674,429 + +0.2
4,674,429 + +0.3
4,674,430 - -1.6
4,674,430 - -0.7
4,674,510 + -1.1
4,674,510 + +2.2
4,674,510 + -0.0
4,674,510 + +0.1
4,674,510 + -0.1
4,674,510 + +1.4
4,674,511 - -1.8
4,674,511 - -0.6
4,674,538 + +0.6
4,674,538 + -1.3
4,674,539 - -2.6
4,674,572 + -0.4
4,674,573 - -0.2
4,674,811 - AO353_21355 0.33 +1.0
4,674,906 - AO353_21355 0.45 +0.2
4,674,942 + AO353_21355 0.49 -1.4
4,675,238 - AO353_21355 0.85 -0.2
4,675,363 + -0.0
4,675,412 + +0.7
4,675,412 + -2.8
4,675,481 + +0.4
4,675,481 + -0.0
4,675,481 + -0.1
4,675,481 + -0.4
4,675,481 + -0.4
4,675,482 - -1.2
4,675,482 - -0.0
4,675,482 - -0.4
4,675,482 - -0.7
4,675,552 + +1.6
4,675,552 + -0.3
4,675,552 + +0.2
4,675,552 + -0.4
4,675,552 + -0.0
4,675,552 + -0.4
4,675,553 - -0.3
4,675,553 - -0.2
4,675,553 - -1.4
4,675,747 + AO353_21360 0.13 -1.4
4,675,747 + AO353_21360 0.13 -1.4
4,675,747 + AO353_21360 0.13 -0.9
4,675,747 + AO353_21360 0.13 -0.3
4,675,747 + AO353_21360 0.13 -2.2
4,675,747 + AO353_21360 0.13 -0.0
4,675,748 - AO353_21360 0.13 +1.2
4,675,748 - AO353_21360 0.13 -0.6
4,675,748 - AO353_21360 0.13 -1.8
4,675,748 - AO353_21360 0.13 -0.4
4,675,835 + AO353_21360 0.18 +0.0
4,675,948 + AO353_21360 0.23 +0.2
4,675,948 + AO353_21360 0.23 -0.7
4,676,078 - AO353_21360 0.30 +0.2
4,676,078 - AO353_21360 0.30 -0.2
4,676,092 + AO353_21360 0.31 +1.4
4,676,092 + AO353_21360 0.31 +0.1
4,676,093 - AO353_21360 0.31 -0.1
4,676,218 + AO353_21360 0.37 +0.8

Or see this region's nucleotide sequence