Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_20460

Experiment: Furfuryl Alcohol 0.125 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_20450 and AO353_20455 overlap by 4 nucleotidesAO353_20455 and AO353_20460 are separated by 51 nucleotidesAO353_20460 and AO353_20465 are separated by 210 nucleotides AO353_20450: AO353_20450 - hypothetical protein, at 4,492,914 to 4,493,282 _20450 AO353_20455: AO353_20455 - HAD family hydrolase, at 4,493,279 to 4,493,932 _20455 AO353_20460: AO353_20460 - hypothetical protein, at 4,493,984 to 4,494,520 _20460 AO353_20465: AO353_20465 - diguanylate cyclase, at 4,494,731 to 4,496,302 _20465 Position (kb) 4493 4494 4495Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4492.989 kb on - strand, within AO353_20450at 4493.157 kb on + strand, within AO353_20450at 4493.157 kb on + strand, within AO353_20450at 4493.157 kb on + strand, within AO353_20450at 4493.157 kb on + strand, within AO353_20450at 4493.157 kb on + strand, within AO353_20450at 4493.158 kb on - strand, within AO353_20450at 4493.158 kb on - strand, within AO353_20450at 4493.158 kb on - strand, within AO353_20450at 4493.164 kb on + strand, within AO353_20450at 4493.164 kb on + strand, within AO353_20450at 4493.188 kb on + strand, within AO353_20450at 4493.188 kb on + strand, within AO353_20450at 4493.188 kb on + strand, within AO353_20450at 4493.188 kb on + strand, within AO353_20450at 4493.188 kb on + strand, within AO353_20450at 4493.188 kb on + strand, within AO353_20450at 4493.188 kb on + strand, within AO353_20450at 4493.188 kb on + strand, within AO353_20450at 4493.188 kb on + strand, within AO353_20450at 4493.188 kb on + strand, within AO353_20450at 4493.188 kb on + strand, within AO353_20450at 4493.188 kb on + strand, within AO353_20450at 4493.189 kb on - strand, within AO353_20450at 4493.189 kb on - strand, within AO353_20450at 4493.189 kb on - strand, within AO353_20450at 4493.189 kb on - strand, within AO353_20450at 4493.189 kb on - strand, within AO353_20450at 4493.189 kb on - strand, within AO353_20450at 4493.194 kb on + strand, within AO353_20450at 4493.194 kb on + strand, within AO353_20450at 4493.194 kb on + strand, within AO353_20450at 4493.194 kb on + strand, within AO353_20450at 4493.194 kb on + strand, within AO353_20450at 4493.194 kb on + strand, within AO353_20450at 4493.194 kb on + strand, within AO353_20450at 4493.194 kb on + strand, within AO353_20450at 4493.195 kb on - strand, within AO353_20450at 4493.195 kb on - strand, within AO353_20450at 4493.195 kb on - strand, within AO353_20450at 4493.195 kb on - strand, within AO353_20450at 4493.249 kb on + strandat 4493.249 kb on + strandat 4493.249 kb on + strandat 4493.249 kb on + strandat 4493.250 kb on - strandat 4493.250 kb on - strandat 4493.263 kb on - strandat 4493.459 kb on + strand, within AO353_20455at 4493.460 kb on - strand, within AO353_20455at 4493.682 kb on + strand, within AO353_20455at 4493.682 kb on + strand, within AO353_20455at 4493.683 kb on - strand, within AO353_20455at 4493.819 kb on + strand, within AO353_20455at 4493.819 kb on + strand, within AO353_20455at 4493.819 kb on + strand, within AO353_20455at 4493.819 kb on + strand, within AO353_20455at 4493.819 kb on + strand, within AO353_20455at 4493.819 kb on + strand, within AO353_20455at 4493.819 kb on + strand, within AO353_20455at 4493.820 kb on - strand, within AO353_20455at 4493.820 kb on - strand, within AO353_20455at 4493.820 kb on - strand, within AO353_20455at 4493.820 kb on - strand, within AO353_20455at 4493.959 kb on + strandat 4493.970 kb on - strandat 4494.048 kb on + strand, within AO353_20460at 4494.048 kb on + strand, within AO353_20460at 4494.048 kb on + strand, within AO353_20460at 4494.049 kb on - strand, within AO353_20460at 4494.130 kb on - strand, within AO353_20460at 4494.130 kb on - strand, within AO353_20460at 4494.130 kb on - strand, within AO353_20460at 4494.130 kb on - strand, within AO353_20460at 4494.159 kb on + strand, within AO353_20460at 4494.159 kb on + strand, within AO353_20460at 4494.160 kb on - strand, within AO353_20460at 4494.160 kb on - strand, within AO353_20460at 4494.160 kb on - strand, within AO353_20460at 4494.160 kb on - strandat 4494.250 kb on + strand, within AO353_20460at 4494.250 kb on + strand, within AO353_20460at 4494.251 kb on - strand, within AO353_20460at 4494.288 kb on + strand, within AO353_20460at 4494.289 kb on - strand, within AO353_20460at 4494.320 kb on + strand, within AO353_20460at 4494.320 kb on + strand, within AO353_20460at 4494.321 kb on - strand, within AO353_20460at 4494.321 kb on - strand, within AO353_20460at 4494.321 kb on - strand, within AO353_20460at 4494.321 kb on - strand, within AO353_20460at 4494.321 kb on - strand, within AO353_20460at 4494.387 kb on + strand, within AO353_20460at 4494.387 kb on + strand, within AO353_20460at 4494.387 kb on + strand, within AO353_20460at 4494.388 kb on - strand, within AO353_20460at 4494.388 kb on - strand, within AO353_20460at 4494.388 kb on - strand, within AO353_20460at 4494.388 kb on - strandat 4494.388 kb on - strand, within AO353_20460at 4494.388 kb on - strand, within AO353_20460at 4494.388 kb on - strand, within AO353_20460at 4494.411 kb on - strand, within AO353_20460at 4494.429 kb on + strand, within AO353_20460at 4494.430 kb on - strand, within AO353_20460at 4494.511 kb on + strandat 4494.511 kb on + strandat 4494.512 kb on - strandat 4494.512 kb on - strandat 4494.512 kb on - strandat 4494.512 kb on - strandat 4494.512 kb on - strandat 4494.512 kb on - strandat 4494.513 kb on + strandat 4494.513 kb on + strandat 4494.513 kb on + strandat 4494.513 kb on + strandat 4494.513 kb on + strandat 4494.513 kb on + strandat 4494.513 kb on + strandat 4494.513 kb on + strandat 4494.513 kb on + strandat 4494.513 kb on + strandat 4494.514 kb on - strandat 4494.514 kb on - strandat 4494.599 kb on + strandat 4494.599 kb on + strandat 4494.599 kb on + strandat 4494.599 kb on + strandat 4494.600 kb on - strandat 4494.600 kb on - strandat 4494.600 kb on - strandat 4494.661 kb on + strandat 4494.661 kb on + strandat 4494.661 kb on + strandat 4494.662 kb on - strandat 4494.666 kb on + strandat 4494.666 kb on + strandat 4494.711 kb on - strandat 4494.711 kb on - strandat 4494.758 kb on + strandat 4494.758 kb on + strandat 4494.759 kb on - strandat 4494.759 kb on - strandat 4494.759 kb on - strandat 4494.852 kb on - strandat 4495.075 kb on - strand, within AO353_20465at 4495.075 kb on - strand, within AO353_20465at 4495.097 kb on - strand, within AO353_20465at 4495.166 kb on + strand, within AO353_20465at 4495.192 kb on + strand, within AO353_20465at 4495.192 kb on + strand, within AO353_20465at 4495.192 kb on + strand, within AO353_20465at 4495.192 kb on + strand, within AO353_20465at 4495.193 kb on - strand, within AO353_20465at 4495.193 kb on - strand, within AO353_20465at 4495.193 kb on - strand, within AO353_20465at 4495.325 kb on + strand, within AO353_20465at 4495.326 kb on - strand, within AO353_20465at 4495.396 kb on + strand, within AO353_20465at 4495.459 kb on + strand, within AO353_20465at 4495.459 kb on + strand, within AO353_20465at 4495.459 kb on + strand, within AO353_20465at 4495.460 kb on - strand, within AO353_20465at 4495.472 kb on + strand, within AO353_20465at 4495.472 kb on + strand, within AO353_20465at 4495.472 kb on + strand, within AO353_20465at 4495.472 kb on + strand, within AO353_20465at 4495.472 kb on + strand, within AO353_20465at 4495.473 kb on - strand, within AO353_20465at 4495.473 kb on - strand, within AO353_20465at 4495.473 kb on - strand, within AO353_20465at 4495.473 kb on - strand, within AO353_20465at 4495.473 kb on - strand, within AO353_20465at 4495.473 kb on - strand, within AO353_20465

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.125 vol%
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4,492,989 - AO353_20450 0.20 +0.1
4,493,157 + AO353_20450 0.66 +0.3
4,493,157 + AO353_20450 0.66 -0.9
4,493,157 + AO353_20450 0.66 -1.4
4,493,157 + AO353_20450 0.66 +0.4
4,493,157 + AO353_20450 0.66 -0.2
4,493,158 - AO353_20450 0.66 +0.0
4,493,158 - AO353_20450 0.66 +2.3
4,493,158 - AO353_20450 0.66 +0.6
4,493,164 + AO353_20450 0.68 +0.2
4,493,164 + AO353_20450 0.68 -0.6
4,493,188 + AO353_20450 0.74 +2.0
4,493,188 + AO353_20450 0.74 -0.5
4,493,188 + AO353_20450 0.74 -1.7
4,493,188 + AO353_20450 0.74 +0.2
4,493,188 + AO353_20450 0.74 -1.7
4,493,188 + AO353_20450 0.74 +1.6
4,493,188 + AO353_20450 0.74 +0.2
4,493,188 + AO353_20450 0.74 +0.4
4,493,188 + AO353_20450 0.74 -0.1
4,493,188 + AO353_20450 0.74 -0.6
4,493,188 + AO353_20450 0.74 +0.4
4,493,188 + AO353_20450 0.74 -0.4
4,493,189 - AO353_20450 0.75 -0.2
4,493,189 - AO353_20450 0.75 +0.4
4,493,189 - AO353_20450 0.75 -0.4
4,493,189 - AO353_20450 0.75 +0.7
4,493,189 - AO353_20450 0.75 +0.2
4,493,189 - AO353_20450 0.75 +0.6
4,493,194 + AO353_20450 0.76 +0.6
4,493,194 + AO353_20450 0.76 -0.1
4,493,194 + AO353_20450 0.76 +0.9
4,493,194 + AO353_20450 0.76 +0.0
4,493,194 + AO353_20450 0.76 -0.1
4,493,194 + AO353_20450 0.76 -0.4
4,493,194 + AO353_20450 0.76 +0.0
4,493,194 + AO353_20450 0.76 -0.5
4,493,195 - AO353_20450 0.76 -0.2
4,493,195 - AO353_20450 0.76 -0.8
4,493,195 - AO353_20450 0.76 -0.2
4,493,195 - AO353_20450 0.76 -3.3
4,493,249 + +0.6
4,493,249 + -1.4
4,493,249 + -0.2
4,493,249 + +0.6
4,493,250 - -1.4
4,493,250 - +0.7
4,493,263 - +0.6
4,493,459 + AO353_20455 0.28 -0.6
4,493,460 - AO353_20455 0.28 +0.0
4,493,682 + AO353_20455 0.62 +0.0
4,493,682 + AO353_20455 0.62 -0.4
4,493,683 - AO353_20455 0.62 +1.6
4,493,819 + AO353_20455 0.83 -0.4
4,493,819 + AO353_20455 0.83 +0.0
4,493,819 + AO353_20455 0.83 +0.3
4,493,819 + AO353_20455 0.83 +0.1
4,493,819 + AO353_20455 0.83 -1.2
4,493,819 + AO353_20455 0.83 +1.1
4,493,819 + AO353_20455 0.83 +0.9
4,493,820 - AO353_20455 0.83 +0.4
4,493,820 - AO353_20455 0.83 -0.5
4,493,820 - AO353_20455 0.83 -0.1
4,493,820 - AO353_20455 0.83 +0.9
4,493,959 + -0.4
4,493,970 - -0.6
4,494,048 + AO353_20460 0.12 -0.9
4,494,048 + AO353_20460 0.12 -1.7
4,494,048 + AO353_20460 0.12 +2.1
4,494,049 - AO353_20460 0.12 +0.1
4,494,130 - AO353_20460 0.27 -0.2
4,494,130 - AO353_20460 0.27 -1.7
4,494,130 - AO353_20460 0.27 +0.3
4,494,130 - AO353_20460 0.27 -1.4
4,494,159 + AO353_20460 0.33 +0.0
4,494,159 + AO353_20460 0.33 -1.0
4,494,160 - AO353_20460 0.33 +0.1
4,494,160 - AO353_20460 0.33 -0.5
4,494,160 - AO353_20460 0.33 -0.7
4,494,160 - -1.2
4,494,250 + AO353_20460 0.50 +1.4
4,494,250 + AO353_20460 0.50 -1.3
4,494,251 - AO353_20460 0.50 +2.4
4,494,288 + AO353_20460 0.57 -0.4
4,494,289 - AO353_20460 0.57 -1.0
4,494,320 + AO353_20460 0.63 +0.6
4,494,320 + AO353_20460 0.63 +1.1
4,494,321 - AO353_20460 0.63 -0.4
4,494,321 - AO353_20460 0.63 +1.0
4,494,321 - AO353_20460 0.63 +1.1
4,494,321 - AO353_20460 0.63 -0.7
4,494,321 - AO353_20460 0.63 -1.6
4,494,387 + AO353_20460 0.75 -0.2
4,494,387 + AO353_20460 0.75 -0.0
4,494,387 + AO353_20460 0.75 +0.2
4,494,388 - AO353_20460 0.75 +0.2
4,494,388 - AO353_20460 0.75 -0.8
4,494,388 - AO353_20460 0.75 +1.4
4,494,388 - -1.0
4,494,388 - AO353_20460 0.75 -1.4
4,494,388 - AO353_20460 0.75 -1.0
4,494,388 - AO353_20460 0.75 -0.7
4,494,411 - AO353_20460 0.80 -1.5
4,494,429 + AO353_20460 0.83 -0.1
4,494,430 - AO353_20460 0.83 -0.4
4,494,511 + -0.7
4,494,511 + +0.6
4,494,512 - +0.4
4,494,512 - +0.9
4,494,512 - -0.0
4,494,512 - -0.7
4,494,512 - +0.6
4,494,512 - -0.4
4,494,513 + -0.0
4,494,513 + +1.1
4,494,513 + -1.4
4,494,513 + +2.2
4,494,513 + -0.1
4,494,513 + -0.4
4,494,513 + +0.0
4,494,513 + +1.6
4,494,513 + -1.4
4,494,513 + -0.0
4,494,514 - +0.3
4,494,514 - -0.0
4,494,599 + +0.8
4,494,599 + +1.0
4,494,599 + -0.1
4,494,599 + -1.2
4,494,600 - -0.7
4,494,600 - -0.6
4,494,600 - +0.8
4,494,661 + -0.4
4,494,661 + +1.0
4,494,661 + -1.0
4,494,662 - +0.3
4,494,666 + +0.3
4,494,666 + +1.1
4,494,711 - +0.8
4,494,711 - -0.4
4,494,758 + +0.5
4,494,758 + -0.2
4,494,759 - -0.6
4,494,759 - -0.4
4,494,759 - +0.0
4,494,852 - +0.6
4,495,075 - AO353_20465 0.22 -1.1
4,495,075 - AO353_20465 0.22 +0.4
4,495,097 - AO353_20465 0.23 -0.2
4,495,166 + AO353_20465 0.28 -0.7
4,495,192 + AO353_20465 0.29 -0.3
4,495,192 + AO353_20465 0.29 +1.2
4,495,192 + AO353_20465 0.29 -1.4
4,495,192 + AO353_20465 0.29 +0.1
4,495,193 - AO353_20465 0.29 -1.2
4,495,193 - AO353_20465 0.29 -0.3
4,495,193 - AO353_20465 0.29 +0.2
4,495,325 + AO353_20465 0.38 +0.9
4,495,326 - AO353_20465 0.38 -1.7
4,495,396 + AO353_20465 0.42 -1.7
4,495,459 + AO353_20465 0.46 +0.5
4,495,459 + AO353_20465 0.46 -1.7
4,495,459 + AO353_20465 0.46 +0.4
4,495,460 - AO353_20465 0.46 +1.6
4,495,472 + AO353_20465 0.47 -0.4
4,495,472 + AO353_20465 0.47 -0.0
4,495,472 + AO353_20465 0.47 +1.2
4,495,472 + AO353_20465 0.47 +0.3
4,495,472 + AO353_20465 0.47 +0.1
4,495,473 - AO353_20465 0.47 +0.4
4,495,473 - AO353_20465 0.47 +3.0
4,495,473 - AO353_20465 0.47 +0.4
4,495,473 - AO353_20465 0.47 +1.9
4,495,473 - AO353_20465 0.47 -1.5
4,495,473 - AO353_20465 0.47 +0.6

Or see this region's nucleotide sequence