Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_17635

Experiment: Furfuryl Alcohol 0.125 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_17625 and AO353_17630 are separated by 31 nucleotidesAO353_17630 and AO353_17635 are separated by 8 nucleotidesAO353_17635 and AO353_17640 are separated by 248 nucleotides AO353_17625: AO353_17625 - RNA polymerase subunit sigma, at 3,885,297 to 3,885,878 _17625 AO353_17630: AO353_17630 - RNA polymerase subunit sigma, at 3,885,910 to 3,886,497 _17630 AO353_17635: AO353_17635 - RNA polymerase subunit sigma, at 3,886,506 to 3,887,465 _17635 AO353_17640: AO353_17640 - serine peptidase, at 3,887,714 to 3,889,141 _17640 Position (kb) 3886 3887 3888Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3885.510 kb on + strand, within AO353_17625at 3885.510 kb on + strand, within AO353_17625at 3885.510 kb on + strand, within AO353_17625at 3885.510 kb on + strand, within AO353_17625at 3885.511 kb on - strand, within AO353_17625at 3885.512 kb on + strand, within AO353_17625at 3885.512 kb on + strand, within AO353_17625at 3885.513 kb on - strand, within AO353_17625at 3885.552 kb on + strand, within AO353_17625at 3885.552 kb on + strand, within AO353_17625at 3885.552 kb on + strand, within AO353_17625at 3885.553 kb on - strand, within AO353_17625at 3885.553 kb on - strand, within AO353_17625at 3885.615 kb on + strand, within AO353_17625at 3885.615 kb on + strand, within AO353_17625at 3885.615 kb on + strand, within AO353_17625at 3885.615 kb on + strand, within AO353_17625at 3885.616 kb on - strand, within AO353_17625at 3885.616 kb on - strand, within AO353_17625at 3885.616 kb on - strand, within AO353_17625at 3885.616 kb on - strand, within AO353_17625at 3885.616 kb on - strand, within AO353_17625at 3885.616 kb on - strand, within AO353_17625at 3885.724 kb on + strand, within AO353_17625at 3885.724 kb on + strand, within AO353_17625at 3885.724 kb on + strand, within AO353_17625at 3885.728 kb on + strand, within AO353_17625at 3885.728 kb on + strand, within AO353_17625at 3885.729 kb on - strand, within AO353_17625at 3885.737 kb on - strand, within AO353_17625at 3885.742 kb on + strand, within AO353_17625at 3885.766 kb on - strand, within AO353_17625at 3885.804 kb on - strand, within AO353_17625at 3886.222 kb on + strand, within AO353_17630at 3886.222 kb on + strand, within AO353_17630at 3886.466 kb on - strandat 3886.466 kb on - strandat 3886.466 kb on - strandat 3886.466 kb on - strandat 3886.466 kb on - strandat 3886.522 kb on + strandat 3886.523 kb on - strandat 3886.523 kb on - strandat 3886.523 kb on - strandat 3886.526 kb on + strandat 3886.526 kb on + strandat 3886.526 kb on + strandat 3886.526 kb on + strandat 3886.526 kb on + strandat 3886.526 kb on + strandat 3886.526 kb on + strandat 3886.527 kb on - strandat 3886.527 kb on - strandat 3886.564 kb on - strandat 3886.564 kb on - strandat 3886.649 kb on + strand, within AO353_17635at 3886.650 kb on - strand, within AO353_17635at 3886.650 kb on - strand, within AO353_17635at 3886.655 kb on + strand, within AO353_17635at 3886.656 kb on - strand, within AO353_17635at 3886.714 kb on + strand, within AO353_17635at 3886.714 kb on + strand, within AO353_17635at 3886.715 kb on - strand, within AO353_17635at 3886.747 kb on + strand, within AO353_17635at 3886.763 kb on + strand, within AO353_17635at 3886.763 kb on + strand, within AO353_17635at 3886.763 kb on + strand, within AO353_17635at 3886.764 kb on - strand, within AO353_17635at 3886.764 kb on - strand, within AO353_17635at 3886.805 kb on + strand, within AO353_17635at 3886.805 kb on + strand, within AO353_17635at 3886.806 kb on - strand, within AO353_17635at 3886.858 kb on - strand, within AO353_17635at 3886.858 kb on - strand, within AO353_17635at 3886.858 kb on - strand, within AO353_17635at 3887.149 kb on + strand, within AO353_17635at 3887.149 kb on + strand, within AO353_17635at 3887.149 kb on + strand, within AO353_17635at 3887.150 kb on - strand, within AO353_17635at 3887.189 kb on + strand, within AO353_17635at 3887.190 kb on - strand, within AO353_17635at 3887.190 kb on - strand, within AO353_17635at 3887.195 kb on + strand, within AO353_17635at 3887.196 kb on - strand, within AO353_17635at 3887.244 kb on + strand, within AO353_17635at 3887.244 kb on + strand, within AO353_17635at 3887.244 kb on + strand, within AO353_17635at 3887.244 kb on + strand, within AO353_17635at 3887.244 kb on + strand, within AO353_17635at 3887.244 kb on + strand, within AO353_17635at 3887.244 kb on + strand, within AO353_17635at 3887.244 kb on + strand, within AO353_17635at 3887.244 kb on + strand, within AO353_17635at 3887.244 kb on + strand, within AO353_17635at 3887.244 kb on + strand, within AO353_17635at 3887.244 kb on + strand, within AO353_17635at 3887.245 kb on - strand, within AO353_17635at 3887.245 kb on - strand, within AO353_17635at 3887.245 kb on - strand, within AO353_17635at 3887.245 kb on - strand, within AO353_17635at 3887.245 kb on - strand, within AO353_17635at 3887.245 kb on - strand, within AO353_17635at 3887.245 kb on - strand, within AO353_17635at 3887.245 kb on - strand, within AO353_17635at 3887.316 kb on - strand, within AO353_17635at 3887.316 kb on - strand, within AO353_17635at 3887.323 kb on + strand, within AO353_17635at 3887.386 kb on + strandat 3887.386 kb on + strandat 3887.387 kb on - strandat 3887.444 kb on + strandat 3887.444 kb on + strandat 3887.445 kb on - strandat 3887.592 kb on + strandat 3887.592 kb on + strandat 3887.594 kb on + strandat 3887.594 kb on + strandat 3887.594 kb on + strandat 3887.653 kb on + strandat 3887.653 kb on + strandat 3887.653 kb on + strandat 3887.653 kb on + strandat 3887.653 kb on + strandat 3887.653 kb on + strandat 3887.653 kb on + strandat 3887.665 kb on + strandat 3888.038 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.125 vol%
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3,885,510 + AO353_17625 0.37 +0.8
3,885,510 + AO353_17625 0.37 +0.1
3,885,510 + AO353_17625 0.37 +0.0
3,885,510 + AO353_17625 0.37 -0.2
3,885,511 - AO353_17625 0.37 -0.1
3,885,512 + AO353_17625 0.37 +0.2
3,885,512 + AO353_17625 0.37 -0.7
3,885,513 - AO353_17625 0.37 -0.9
3,885,552 + AO353_17625 0.44 -0.8
3,885,552 + AO353_17625 0.44 -0.2
3,885,552 + AO353_17625 0.44 +1.0
3,885,553 - AO353_17625 0.44 +0.8
3,885,553 - AO353_17625 0.44 +1.9
3,885,615 + AO353_17625 0.55 +1.5
3,885,615 + AO353_17625 0.55 +0.0
3,885,615 + AO353_17625 0.55 +1.4
3,885,615 + AO353_17625 0.55 -0.3
3,885,616 - AO353_17625 0.55 -0.2
3,885,616 - AO353_17625 0.55 -0.8
3,885,616 - AO353_17625 0.55 -0.8
3,885,616 - AO353_17625 0.55 +0.4
3,885,616 - AO353_17625 0.55 +0.2
3,885,616 - AO353_17625 0.55 -1.5
3,885,724 + AO353_17625 0.73 -0.2
3,885,724 + AO353_17625 0.73 -0.5
3,885,724 + AO353_17625 0.73 -0.5
3,885,728 + AO353_17625 0.74 -2.2
3,885,728 + AO353_17625 0.74 -0.7
3,885,729 - AO353_17625 0.74 -1.5
3,885,737 - AO353_17625 0.76 +3.6
3,885,742 + AO353_17625 0.76 +0.8
3,885,766 - AO353_17625 0.81 +1.5
3,885,804 - AO353_17625 0.87 -0.6
3,886,222 + AO353_17630 0.53 -1.4
3,886,222 + AO353_17630 0.53 -0.8
3,886,466 - +0.8
3,886,466 - -0.2
3,886,466 - +0.5
3,886,466 - -1.1
3,886,466 - -0.6
3,886,522 + +1.2
3,886,523 - -0.9
3,886,523 - -1.5
3,886,523 - -0.6
3,886,526 + -1.5
3,886,526 + +2.4
3,886,526 + -1.2
3,886,526 + +1.8
3,886,526 + -1.0
3,886,526 + -2.4
3,886,526 + -1.4
3,886,527 - -1.2
3,886,527 - +0.1
3,886,564 - +0.1
3,886,564 - +0.5
3,886,649 + AO353_17635 0.15 -0.5
3,886,650 - AO353_17635 0.15 -0.2
3,886,650 - AO353_17635 0.15 -1.5
3,886,655 + AO353_17635 0.16 -1.2
3,886,656 - AO353_17635 0.16 +0.5
3,886,714 + AO353_17635 0.22 +0.1
3,886,714 + AO353_17635 0.22 +0.2
3,886,715 - AO353_17635 0.22 -0.2
3,886,747 + AO353_17635 0.25 +0.1
3,886,763 + AO353_17635 0.27 -1.0
3,886,763 + AO353_17635 0.27 -0.6
3,886,763 + AO353_17635 0.27 -0.5
3,886,764 - AO353_17635 0.27 +0.2
3,886,764 - AO353_17635 0.27 -0.5
3,886,805 + AO353_17635 0.31 +1.4
3,886,805 + AO353_17635 0.31 -0.5
3,886,806 - AO353_17635 0.31 -1.4
3,886,858 - AO353_17635 0.37 +0.3
3,886,858 - AO353_17635 0.37 -0.2
3,886,858 - AO353_17635 0.37 +0.0
3,887,149 + AO353_17635 0.67 -0.3
3,887,149 + AO353_17635 0.67 -0.2
3,887,149 + AO353_17635 0.67 -1.5
3,887,150 - AO353_17635 0.67 +1.0
3,887,189 + AO353_17635 0.71 +1.5
3,887,190 - AO353_17635 0.71 -0.6
3,887,190 - AO353_17635 0.71 +1.8
3,887,195 + AO353_17635 0.72 +1.0
3,887,196 - AO353_17635 0.72 -1.2
3,887,244 + AO353_17635 0.77 -1.8
3,887,244 + AO353_17635 0.77 -0.8
3,887,244 + AO353_17635 0.77 +1.1
3,887,244 + AO353_17635 0.77 -1.3
3,887,244 + AO353_17635 0.77 -1.8
3,887,244 + AO353_17635 0.77 -0.8
3,887,244 + AO353_17635 0.77 -0.3
3,887,244 + AO353_17635 0.77 -0.9
3,887,244 + AO353_17635 0.77 -1.4
3,887,244 + AO353_17635 0.77 +1.8
3,887,244 + AO353_17635 0.77 -2.3
3,887,244 + AO353_17635 0.77 -0.6
3,887,245 - AO353_17635 0.77 +0.0
3,887,245 - AO353_17635 0.77 -0.2
3,887,245 - AO353_17635 0.77 -0.2
3,887,245 - AO353_17635 0.77 +0.4
3,887,245 - AO353_17635 0.77 -0.6
3,887,245 - AO353_17635 0.77 +0.1
3,887,245 - AO353_17635 0.77 +0.2
3,887,245 - AO353_17635 0.77 -0.8
3,887,316 - AO353_17635 0.84 -1.4
3,887,316 - AO353_17635 0.84 +1.8
3,887,323 + AO353_17635 0.85 -1.2
3,887,386 + -0.2
3,887,386 + +0.1
3,887,387 - -0.2
3,887,444 + +0.4
3,887,444 + +0.1
3,887,445 - -0.5
3,887,592 + +0.3
3,887,592 + +0.5
3,887,594 + +0.4
3,887,594 + -0.4
3,887,594 + -1.8
3,887,653 + +2.0
3,887,653 + -0.6
3,887,653 + +0.2
3,887,653 + +1.2
3,887,653 + +0.6
3,887,653 + -0.8
3,887,653 + +0.4
3,887,665 + -0.6
3,888,038 + -0.8

Or see this region's nucleotide sequence