Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_09815

Experiment: Furfuryl Alcohol 0.125 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_09800 and AO353_09805 are separated by 3 nucleotidesAO353_09805 and AO353_09810 are separated by 105 nucleotidesAO353_09810 and AO353_09815 are separated by 75 nucleotidesAO353_09815 and AO353_09820 are separated by 67 nucleotidesAO353_09820 and AO353_09825 are separated by 85 nucleotides AO353_09800: AO353_09800 - hypothetical protein, at 2,144,731 to 2,144,952 _09800 AO353_09805: AO353_09805 - hypothetical protein, at 2,144,956 to 2,145,243 _09805 AO353_09810: AO353_09810 - hypothetical protein, at 2,145,349 to 2,145,795 _09810 AO353_09815: AO353_09815 - hypothetical protein, at 2,145,871 to 2,146,305 _09815 AO353_09820: AO353_09820 - hypothetical protein, at 2,146,373 to 2,146,852 _09820 AO353_09825: AO353_09825 - integration host factor, at 2,146,938 to 2,147,213 _09825 Position (kb) 2145 2146 2147Strain fitness (log2 ratio) -2 -1 0 1 2at 2144.892 kb on - strand, within AO353_09800at 2145.241 kb on + strandat 2145.279 kb on - strandat 2145.469 kb on + strand, within AO353_09810at 2145.584 kb on - strand, within AO353_09810at 2145.612 kb on - strand, within AO353_09810at 2145.612 kb on - strand, within AO353_09810at 2145.612 kb on - strand, within AO353_09810at 2145.612 kb on - strand, within AO353_09810at 2145.646 kb on - strand, within AO353_09810at 2145.648 kb on - strand, within AO353_09810at 2145.678 kb on - strand, within AO353_09810at 2145.678 kb on - strand, within AO353_09810at 2145.679 kb on + strand, within AO353_09810at 2145.679 kb on + strand, within AO353_09810at 2145.680 kb on - strand, within AO353_09810at 2145.699 kb on + strand, within AO353_09810at 2145.700 kb on - strand, within AO353_09810at 2145.803 kb on + strandat 2145.819 kb on + strandat 2145.848 kb on + strandat 2145.853 kb on + strandat 2145.853 kb on + strandat 2145.853 kb on + strandat 2145.897 kb on + strandat 2145.915 kb on - strand, within AO353_09815at 2145.915 kb on - strand, within AO353_09815at 2146.196 kb on - strand, within AO353_09815at 2146.207 kb on + strand, within AO353_09815at 2146.210 kb on - strand, within AO353_09815at 2146.228 kb on + strand, within AO353_09815at 2146.228 kb on + strand, within AO353_09815at 2146.229 kb on - strand, within AO353_09815at 2146.229 kb on - strand, within AO353_09815at 2146.231 kb on - strand, within AO353_09815at 2146.231 kb on - strand, within AO353_09815at 2146.231 kb on - strand, within AO353_09815at 2146.273 kb on + strandat 2146.286 kb on - strandat 2146.286 kb on - strandat 2146.350 kb on - strandat 2146.368 kb on + strandat 2146.382 kb on - strandat 2146.382 kb on - strandat 2146.382 kb on - strandat 2146.382 kb on - strandat 2146.401 kb on + strandat 2146.401 kb on + strandat 2146.401 kb on + strandat 2146.401 kb on + strandat 2146.401 kb on + strandat 2146.401 kb on + strandat 2146.401 kb on + strandat 2146.402 kb on - strandat 2146.402 kb on - strandat 2146.402 kb on - strandat 2146.402 kb on - strandat 2146.402 kb on - strandat 2146.402 kb on - strandat 2146.404 kb on + strandat 2146.404 kb on + strandat 2146.405 kb on - strandat 2146.405 kb on - strandat 2146.475 kb on - strand, within AO353_09820at 2146.497 kb on + strand, within AO353_09820at 2146.497 kb on + strand, within AO353_09820at 2146.497 kb on + strand, within AO353_09820at 2146.497 kb on + strand, within AO353_09820at 2146.497 kb on + strand, within AO353_09820at 2146.497 kb on + strand, within AO353_09820at 2146.497 kb on + strand, within AO353_09820at 2146.498 kb on - strandat 2146.498 kb on - strand, within AO353_09820at 2146.498 kb on - strand, within AO353_09820at 2146.498 kb on - strand, within AO353_09820at 2146.498 kb on - strand, within AO353_09820at 2146.498 kb on - strand, within AO353_09820at 2146.498 kb on - strand, within AO353_09820at 2146.498 kb on - strand, within AO353_09820at 2146.508 kb on + strand, within AO353_09820at 2146.508 kb on + strand, within AO353_09820at 2146.508 kb on + strand, within AO353_09820at 2146.508 kb on + strand, within AO353_09820at 2146.508 kb on + strand, within AO353_09820at 2146.508 kb on + strand, within AO353_09820at 2146.509 kb on - strand, within AO353_09820at 2146.509 kb on - strand, within AO353_09820at 2146.509 kb on - strand, within AO353_09820at 2146.509 kb on - strand, within AO353_09820at 2146.509 kb on - strand, within AO353_09820at 2146.509 kb on - strand, within AO353_09820at 2146.509 kb on - strand, within AO353_09820at 2146.689 kb on + strand, within AO353_09820at 2146.689 kb on + strand, within AO353_09820at 2146.690 kb on - strand, within AO353_09820at 2146.690 kb on - strand, within AO353_09820at 2146.694 kb on - strand, within AO353_09820at 2146.694 kb on - strand, within AO353_09820at 2146.703 kb on + strand, within AO353_09820at 2146.704 kb on - strand, within AO353_09820at 2146.704 kb on - strand, within AO353_09820at 2146.704 kb on - strand, within AO353_09820at 2146.704 kb on - strand, within AO353_09820at 2146.745 kb on + strand, within AO353_09820at 2146.746 kb on - strand, within AO353_09820at 2146.771 kb on + strand, within AO353_09820at 2146.771 kb on + strand, within AO353_09820at 2146.771 kb on + strand, within AO353_09820at 2146.772 kb on - strand, within AO353_09820at 2146.772 kb on - strand, within AO353_09820at 2146.790 kb on + strand, within AO353_09820at 2146.790 kb on + strand, within AO353_09820at 2146.791 kb on - strand, within AO353_09820at 2146.791 kb on - strand, within AO353_09820at 2146.791 kb on - strand, within AO353_09820at 2146.831 kb on - strandat 2146.831 kb on - strandat 2146.831 kb on - strandat 2146.851 kb on - strandat 2146.851 kb on - strandat 2146.932 kb on + strandat 2146.932 kb on + strandat 2146.932 kb on + strandat 2146.932 kb on + strandat 2146.933 kb on - strandat 2146.933 kb on - strandat 2147.069 kb on + strand, within AO353_09825at 2147.069 kb on + strand, within AO353_09825at 2147.099 kb on + strand, within AO353_09825at 2147.100 kb on - strand, within AO353_09825at 2147.207 kb on + strandat 2147.207 kb on + strandat 2147.208 kb on - strandat 2147.208 kb on - strandat 2147.208 kb on - strandat 2147.208 kb on - strandat 2147.245 kb on + strandat 2147.245 kb on + strandat 2147.245 kb on + strandat 2147.245 kb on + strandat 2147.245 kb on + strandat 2147.245 kb on + strandat 2147.245 kb on + strandat 2147.245 kb on + strandat 2147.245 kb on + strandat 2147.245 kb on + strandat 2147.245 kb on + strandat 2147.245 kb on + strandat 2147.246 kb on - strandat 2147.246 kb on - strandat 2147.246 kb on - strandat 2147.246 kb on - strandat 2147.246 kb on - strandat 2147.246 kb on - strandat 2147.246 kb on - strandat 2147.246 kb on - strandat 2147.246 kb on - strandat 2147.246 kb on - strandat 2147.246 kb on - strandat 2147.246 kb on - strandat 2147.293 kb on + strandat 2147.293 kb on + strandat 2147.294 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.125 vol%
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2,144,892 - AO353_09800 0.73 +0.6
2,145,241 + -1.0
2,145,279 - +2.3
2,145,469 + AO353_09810 0.27 +0.3
2,145,584 - AO353_09810 0.53 +1.6
2,145,612 - AO353_09810 0.59 -0.0
2,145,612 - AO353_09810 0.59 +0.1
2,145,612 - AO353_09810 0.59 -0.3
2,145,612 - AO353_09810 0.59 +0.8
2,145,646 - AO353_09810 0.66 -1.7
2,145,648 - AO353_09810 0.67 +0.6
2,145,678 - AO353_09810 0.74 -0.3
2,145,678 - AO353_09810 0.74 +0.0
2,145,679 + AO353_09810 0.74 -0.0
2,145,679 + AO353_09810 0.74 -0.3
2,145,680 - AO353_09810 0.74 +0.0
2,145,699 + AO353_09810 0.78 +1.3
2,145,700 - AO353_09810 0.79 -0.8
2,145,803 + -0.3
2,145,819 + +1.9
2,145,848 + -0.1
2,145,853 + -0.4
2,145,853 + -1.7
2,145,853 + +0.6
2,145,897 + -1.3
2,145,915 - AO353_09815 0.10 -0.7
2,145,915 - AO353_09815 0.10 -0.2
2,146,196 - AO353_09815 0.75 -0.9
2,146,207 + AO353_09815 0.77 -0.3
2,146,210 - AO353_09815 0.78 -0.6
2,146,228 + AO353_09815 0.82 -0.6
2,146,228 + AO353_09815 0.82 -0.5
2,146,229 - AO353_09815 0.82 -0.4
2,146,229 - AO353_09815 0.82 +0.1
2,146,231 - AO353_09815 0.83 +0.0
2,146,231 - AO353_09815 0.83 -1.6
2,146,231 - AO353_09815 0.83 -2.7
2,146,273 + +0.4
2,146,286 - -0.7
2,146,286 - +0.7
2,146,350 - -0.4
2,146,368 + -2.1
2,146,382 - -0.0
2,146,382 - -0.7
2,146,382 - -0.0
2,146,382 - +0.9
2,146,401 + -1.5
2,146,401 + -0.5
2,146,401 + +0.6
2,146,401 + -1.9
2,146,401 + +0.5
2,146,401 + +1.6
2,146,401 + +0.2
2,146,402 - -2.0
2,146,402 - +0.9
2,146,402 - +0.0
2,146,402 - +0.3
2,146,402 - -0.8
2,146,402 - +2.0
2,146,404 + -0.7
2,146,404 + -0.7
2,146,405 - -0.1
2,146,405 - +0.2
2,146,475 - AO353_09820 0.21 +1.0
2,146,497 + AO353_09820 0.26 -0.7
2,146,497 + AO353_09820 0.26 +0.7
2,146,497 + AO353_09820 0.26 +0.5
2,146,497 + AO353_09820 0.26 +1.0
2,146,497 + AO353_09820 0.26 -0.6
2,146,497 + AO353_09820 0.26 +0.1
2,146,497 + AO353_09820 0.26 +0.5
2,146,498 - +0.3
2,146,498 - AO353_09820 0.26 +0.3
2,146,498 - AO353_09820 0.26 -0.5
2,146,498 - AO353_09820 0.26 +1.8
2,146,498 - AO353_09820 0.26 +0.6
2,146,498 - AO353_09820 0.26 +1.3
2,146,498 - AO353_09820 0.26 +0.6
2,146,498 - AO353_09820 0.26 -0.4
2,146,508 + AO353_09820 0.28 -0.0
2,146,508 + AO353_09820 0.28 -0.9
2,146,508 + AO353_09820 0.28 +0.1
2,146,508 + AO353_09820 0.28 -0.1
2,146,508 + AO353_09820 0.28 +1.3
2,146,508 + AO353_09820 0.28 -0.3
2,146,509 - AO353_09820 0.28 -0.3
2,146,509 - AO353_09820 0.28 -0.8
2,146,509 - AO353_09820 0.28 -0.2
2,146,509 - AO353_09820 0.28 +1.3
2,146,509 - AO353_09820 0.28 -0.0
2,146,509 - AO353_09820 0.28 -0.5
2,146,509 - AO353_09820 0.28 -0.0
2,146,689 + AO353_09820 0.66 +0.3
2,146,689 + AO353_09820 0.66 +0.3
2,146,690 - AO353_09820 0.66 -0.0
2,146,690 - AO353_09820 0.66 -0.3
2,146,694 - AO353_09820 0.67 +1.6
2,146,694 - AO353_09820 0.67 -1.5
2,146,703 + AO353_09820 0.69 +0.3
2,146,704 - AO353_09820 0.69 -0.5
2,146,704 - AO353_09820 0.69 +1.2
2,146,704 - AO353_09820 0.69 -0.7
2,146,704 - AO353_09820 0.69 +0.9
2,146,745 + AO353_09820 0.78 -1.5
2,146,746 - AO353_09820 0.78 +1.7
2,146,771 + AO353_09820 0.83 +1.5
2,146,771 + AO353_09820 0.83 -0.2
2,146,771 + AO353_09820 0.83 -0.6
2,146,772 - AO353_09820 0.83 +0.9
2,146,772 - AO353_09820 0.83 -0.3
2,146,790 + AO353_09820 0.87 +0.3
2,146,790 + AO353_09820 0.87 +1.6
2,146,791 - AO353_09820 0.87 +0.3
2,146,791 - AO353_09820 0.87 +0.3
2,146,791 - AO353_09820 0.87 +1.8
2,146,831 - +0.3
2,146,831 - +0.6
2,146,831 - -0.6
2,146,851 - +0.0
2,146,851 - +0.3
2,146,932 + -0.8
2,146,932 + -0.5
2,146,932 + -0.1
2,146,932 + -0.6
2,146,933 - -1.1
2,146,933 - +0.2
2,147,069 + AO353_09825 0.47 +1.0
2,147,069 + AO353_09825 0.47 +1.0
2,147,099 + AO353_09825 0.58 -1.7
2,147,100 - AO353_09825 0.59 +0.9
2,147,207 + +1.0
2,147,207 + +1.6
2,147,208 - +0.3
2,147,208 - -0.5
2,147,208 - -0.3
2,147,208 - -0.6
2,147,245 + +1.3
2,147,245 + -2.0
2,147,245 + -1.0
2,147,245 + -0.3
2,147,245 + +0.4
2,147,245 + +1.3
2,147,245 + +0.5
2,147,245 + -0.9
2,147,245 + +0.8
2,147,245 + +0.3
2,147,245 + +0.7
2,147,245 + -0.6
2,147,246 - -1.7
2,147,246 - -0.5
2,147,246 - +0.6
2,147,246 - +0.3
2,147,246 - +0.8
2,147,246 - -0.6
2,147,246 - +0.0
2,147,246 - +0.3
2,147,246 - +1.0
2,147,246 - +0.1
2,147,246 - +0.6
2,147,246 - -0.5
2,147,293 + +0.2
2,147,293 + +1.9
2,147,294 - -0.3

Or see this region's nucleotide sequence