Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07905

Experiment: Furfuryl Alcohol 0.125 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_07895 and AO353_07900 are separated by 73 nucleotidesAO353_07900 and AO353_07905 are separated by 425 nucleotidesAO353_07905 and AO353_07910 are separated by 111 nucleotidesAO353_07910 and AO353_07915 are separated by 328 nucleotides AO353_07895: AO353_07895 - fructose-bisphosphate aldolase, at 1,743,357 to 1,743,650 _07895 AO353_07900: AO353_07900 - hypothetical protein, at 1,743,724 to 1,743,990 _07900 AO353_07905: AO353_07905 - hypothetical protein, at 1,744,416 to 1,744,955 _07905 AO353_07910: AO353_07910 - hypothetical protein, at 1,745,067 to 1,745,336 _07910 AO353_07915: AO353_07915 - hypothetical protein, at 1,745,665 to 1,746,039 _07915 Position (kb) 1744 1745Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1743.498 kb on + strand, within AO353_07895at 1743.498 kb on + strand, within AO353_07895at 1743.498 kb on + strand, within AO353_07895at 1743.498 kb on + strand, within AO353_07895at 1743.499 kb on - strand, within AO353_07895at 1743.499 kb on - strand, within AO353_07895at 1743.499 kb on - strand, within AO353_07895at 1743.535 kb on - strand, within AO353_07895at 1743.656 kb on - strandat 1743.661 kb on + strandat 1743.661 kb on + strandat 1743.661 kb on + strandat 1743.661 kb on + strandat 1743.661 kb on + strandat 1743.661 kb on + strandat 1743.661 kb on + strandat 1743.661 kb on + strandat 1743.661 kb on + strandat 1743.661 kb on + strandat 1743.662 kb on - strandat 1743.662 kb on - strandat 1743.662 kb on - strandat 1743.662 kb on - strandat 1743.662 kb on - strandat 1743.662 kb on - strandat 1743.662 kb on - strandat 1743.662 kb on - strandat 1743.662 kb on - strandat 1743.662 kb on - strandat 1743.662 kb on - strandat 1743.662 kb on - strandat 1743.662 kb on - strandat 1743.662 kb on - strandat 1743.662 kb on - strandat 1743.663 kb on + strandat 1743.663 kb on + strandat 1743.663 kb on + strandat 1743.663 kb on + strandat 1743.663 kb on + strandat 1743.663 kb on + strandat 1743.663 kb on + strandat 1743.664 kb on - strandat 1743.664 kb on - strandat 1743.664 kb on - strandat 1743.664 kb on - strandat 1743.709 kb on + strandat 1743.709 kb on + strandat 1743.709 kb on + strandat 1743.709 kb on + strandat 1743.733 kb on - strandat 1743.746 kb on - strandat 1743.746 kb on - strandat 1743.807 kb on + strand, within AO353_07900at 1743.807 kb on + strand, within AO353_07900at 1743.808 kb on - strand, within AO353_07900at 1743.908 kb on + strand, within AO353_07900at 1743.928 kb on - strand, within AO353_07900at 1743.928 kb on - strand, within AO353_07900at 1743.937 kb on + strand, within AO353_07900at 1744.015 kb on + strandat 1744.022 kb on - strandat 1744.055 kb on + strandat 1744.055 kb on + strandat 1744.189 kb on - strandat 1744.198 kb on + strandat 1744.409 kb on - strandat 1744.439 kb on - strandat 1744.527 kb on + strand, within AO353_07905at 1744.530 kb on - strand, within AO353_07905at 1744.547 kb on - strand, within AO353_07905at 1744.695 kb on + strand, within AO353_07905at 1744.695 kb on + strand, within AO353_07905at 1744.737 kb on + strand, within AO353_07905at 1744.738 kb on - strand, within AO353_07905at 1744.764 kb on - strand, within AO353_07905at 1744.770 kb on - strand, within AO353_07905at 1744.821 kb on - strand, within AO353_07905at 1744.884 kb on + strand, within AO353_07905at 1744.887 kb on + strand, within AO353_07905at 1744.907 kb on - strandat 1745.058 kb on + strandat 1745.059 kb on - strandat 1745.066 kb on - strandat 1745.115 kb on - strand, within AO353_07910at 1745.158 kb on - strand, within AO353_07910at 1745.179 kb on + strand, within AO353_07910at 1745.274 kb on - strand, within AO353_07910at 1745.307 kb on + strand, within AO353_07910at 1745.390 kb on + strandat 1745.390 kb on + strandat 1745.391 kb on - strandat 1745.480 kb on + strandat 1745.481 kb on - strandat 1745.509 kb on + strandat 1745.509 kb on + strandat 1745.536 kb on + strandat 1745.547 kb on - strandat 1745.623 kb on - strandat 1745.650 kb on - strandat 1745.693 kb on + strandat 1745.699 kb on + strandat 1745.727 kb on - strand, within AO353_07915at 1745.727 kb on - strand, within AO353_07915at 1745.734 kb on - strand, within AO353_07915at 1745.771 kb on + strand, within AO353_07915at 1745.772 kb on - strand, within AO353_07915at 1745.848 kb on + strand, within AO353_07915at 1745.848 kb on + strand, within AO353_07915at 1745.872 kb on - strand, within AO353_07915at 1745.883 kb on - strand, within AO353_07915at 1745.916 kb on - strand, within AO353_07915at 1745.916 kb on - strand, within AO353_07915at 1745.916 kb on - strand, within AO353_07915

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.125 vol%
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1,743,498 + AO353_07895 0.48 -0.1
1,743,498 + AO353_07895 0.48 +0.9
1,743,498 + AO353_07895 0.48 -0.4
1,743,498 + AO353_07895 0.48 +0.6
1,743,499 - AO353_07895 0.48 +1.4
1,743,499 - AO353_07895 0.48 +0.8
1,743,499 - AO353_07895 0.48 -1.1
1,743,535 - AO353_07895 0.61 -1.4
1,743,656 - +0.2
1,743,661 + -0.2
1,743,661 + -0.5
1,743,661 + +1.2
1,743,661 + -0.2
1,743,661 + -0.5
1,743,661 + -0.2
1,743,661 + -0.3
1,743,661 + -1.7
1,743,661 + -1.5
1,743,661 + -0.6
1,743,662 - +1.2
1,743,662 - +1.7
1,743,662 - -1.0
1,743,662 - +0.5
1,743,662 - +1.0
1,743,662 - +0.8
1,743,662 - +0.8
1,743,662 - -1.8
1,743,662 - -0.1
1,743,662 - -0.9
1,743,662 - -0.8
1,743,662 - +0.4
1,743,662 - -0.6
1,743,662 - -0.6
1,743,662 - +0.2
1,743,663 + -0.2
1,743,663 + -0.8
1,743,663 + -0.9
1,743,663 + +0.6
1,743,663 + -0.9
1,743,663 + -0.2
1,743,663 + -0.1
1,743,664 - -0.4
1,743,664 - +0.6
1,743,664 - +2.8
1,743,664 - +2.8
1,743,709 + +1.2
1,743,709 + +1.4
1,743,709 + -1.7
1,743,709 + -0.0
1,743,733 - +1.8
1,743,746 - +1.4
1,743,746 - -2.7
1,743,807 + AO353_07900 0.31 -1.0
1,743,807 + AO353_07900 0.31 +0.2
1,743,808 - AO353_07900 0.31 -0.2
1,743,908 + AO353_07900 0.69 +0.4
1,743,928 - AO353_07900 0.76 +0.9
1,743,928 - AO353_07900 0.76 -0.1
1,743,937 + AO353_07900 0.80 +0.8
1,744,015 + -0.2
1,744,022 - -0.3
1,744,055 + -0.4
1,744,055 + -0.4
1,744,189 - +0.0
1,744,198 + +1.7
1,744,409 - +0.5
1,744,439 - -1.2
1,744,527 + AO353_07905 0.21 -0.8
1,744,530 - AO353_07905 0.21 -0.9
1,744,547 - AO353_07905 0.24 -0.4
1,744,695 + AO353_07905 0.52 -0.3
1,744,695 + AO353_07905 0.52 -0.4
1,744,737 + AO353_07905 0.59 -0.4
1,744,738 - AO353_07905 0.60 -1.8
1,744,764 - AO353_07905 0.64 -1.5
1,744,770 - AO353_07905 0.66 -1.2
1,744,821 - AO353_07905 0.75 +1.6
1,744,884 + AO353_07905 0.87 -1.3
1,744,887 + AO353_07905 0.87 +0.2
1,744,907 - -1.6
1,745,058 + +0.4
1,745,059 - -0.0
1,745,066 - -1.6
1,745,115 - AO353_07910 0.18 -0.3
1,745,158 - AO353_07910 0.34 -2.1
1,745,179 + AO353_07910 0.41 +1.2
1,745,274 - AO353_07910 0.77 -0.9
1,745,307 + AO353_07910 0.89 -0.4
1,745,390 + -0.4
1,745,390 + -0.4
1,745,391 - -0.7
1,745,480 + +0.4
1,745,481 - +0.5
1,745,509 + -0.1
1,745,509 + -1.4
1,745,536 + -0.2
1,745,547 - -0.0
1,745,623 - +0.5
1,745,650 - +0.5
1,745,693 + -0.5
1,745,699 + -1.4
1,745,727 - AO353_07915 0.17 +1.0
1,745,727 - AO353_07915 0.17 +0.5
1,745,734 - AO353_07915 0.18 +0.7
1,745,771 + AO353_07915 0.28 +0.6
1,745,772 - AO353_07915 0.29 +0.3
1,745,848 + AO353_07915 0.49 +0.8
1,745,848 + AO353_07915 0.49 -0.6
1,745,872 - AO353_07915 0.55 -2.0
1,745,883 - AO353_07915 0.58 +0.1
1,745,916 - AO353_07915 0.67 +1.3
1,745,916 - AO353_07915 0.67 -0.2
1,745,916 - AO353_07915 0.67 -1.9

Or see this region's nucleotide sequence