Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04520

Experiment: Furfuryl Alcohol 0.125 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_04515 and AO353_04520 are separated by 5 nucleotidesAO353_04520 and AO353_04525 are separated by 171 nucleotides AO353_04515: AO353_04515 - signal peptidase, at 973,972 to 974,826 _04515 AO353_04520: AO353_04520 - elongation factor 4, at 974,832 to 976,631 _04520 AO353_04525: AO353_04525 - LPS export ABC transporter permease LptG, at 976,803 to 977,864 _04525 Position (kb) 974 975 976 977Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 973.843 kb on - strandat 973.974 kb on - strandat 973.974 kb on - strandat 973.974 kb on - strandat 973.974 kb on - strandat 973.974 kb on - strandat 973.974 kb on - strandat 973.974 kb on - strandat 973.974 kb on - strandat 974.827 kb on - strandat 974.827 kb on - strandat 974.827 kb on - strandat 974.827 kb on - strandat 974.827 kb on - strandat 974.827 kb on - strandat 974.827 kb on - strandat 974.827 kb on - strandat 974.827 kb on - strandat 974.827 kb on - strandat 974.827 kb on - strandat 974.834 kb on - strandat 974.834 kb on - strandat 974.834 kb on - strandat 974.834 kb on - strandat 974.834 kb on - strandat 974.834 kb on - strandat 974.838 kb on - strandat 974.838 kb on - strandat 974.838 kb on - strandat 974.838 kb on - strandat 974.838 kb on - strandat 975.169 kb on - strand, within AO353_04520at 975.296 kb on - strand, within AO353_04520at 975.438 kb on - strand, within AO353_04520at 975.438 kb on - strand, within AO353_04520at 975.647 kb on - strand, within AO353_04520at 975.737 kb on - strand, within AO353_04520at 975.737 kb on - strand, within AO353_04520at 975.858 kb on + strand, within AO353_04520at 975.858 kb on + strand, within AO353_04520at 975.859 kb on - strand, within AO353_04520at 976.015 kb on + strand, within AO353_04520at 976.194 kb on + strand, within AO353_04520at 976.195 kb on - strand, within AO353_04520at 976.274 kb on - strand, within AO353_04520at 976.367 kb on - strand, within AO353_04520at 976.419 kb on - strand, within AO353_04520at 976.435 kb on + strand, within AO353_04520at 976.436 kb on - strand, within AO353_04520at 976.436 kb on - strand, within AO353_04520at 976.436 kb on - strand, within AO353_04520at 976.436 kb on - strand, within AO353_04520at 976.439 kb on - strand, within AO353_04520at 976.439 kb on - strand, within AO353_04520at 976.661 kb on - strandat 976.695 kb on + strandat 976.695 kb on + strandat 976.695 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.125 vol%
remove
973,843 - -0.1
973,974 - +1.3
973,974 - -1.6
973,974 - -0.1
973,974 - -1.2
973,974 - -1.1
973,974 - -0.8
973,974 - +0.5
973,974 - -0.7
974,827 - -1.7
974,827 - -3.2
974,827 - -0.7
974,827 - -2.3
974,827 - -0.4
974,827 - -0.7
974,827 - -2.4
974,827 - -1.9
974,827 - -0.8
974,827 - -2.8
974,827 - -1.4
974,834 - -1.7
974,834 - -1.3
974,834 - +0.9
974,834 - -1.7
974,834 - +1.9
974,834 - +1.5
974,838 - -0.1
974,838 - -1.5
974,838 - +0.9
974,838 - +0.6
974,838 - +0.9
975,169 - AO353_04520 0.19 -2.7
975,296 - AO353_04520 0.26 -1.9
975,438 - AO353_04520 0.34 +0.5
975,438 - AO353_04520 0.34 -1.7
975,647 - AO353_04520 0.45 -0.7
975,737 - AO353_04520 0.50 -1.4
975,737 - AO353_04520 0.50 -2.5
975,858 + AO353_04520 0.57 -0.1
975,858 + AO353_04520 0.57 -1.1
975,859 - AO353_04520 0.57 -1.4
976,015 + AO353_04520 0.66 +0.4
976,194 + AO353_04520 0.76 +0.5
976,195 - AO353_04520 0.76 -1.1
976,274 - AO353_04520 0.80 -2.7
976,367 - AO353_04520 0.85 -1.0
976,419 - AO353_04520 0.88 -1.1
976,435 + AO353_04520 0.89 -1.7
976,436 - AO353_04520 0.89 -1.2
976,436 - AO353_04520 0.89 -1.9
976,436 - AO353_04520 0.89 -1.7
976,436 - AO353_04520 0.89 +2.2
976,439 - AO353_04520 0.89 -1.1
976,439 - AO353_04520 0.89 -0.9
976,661 - +1.0
976,695 + +0.2
976,695 + +0.9
976,695 + -0.6

Or see this region's nucleotide sequence