Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04365

Experiment: Furfuryl Alcohol 0.125 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_04360 and AO353_04365 are separated by 331 nucleotidesAO353_04365 and AO353_04370 are separated by 145 nucleotidesAO353_04370 and AO353_04375 are separated by 45 nucleotides AO353_04360: AO353_04360 - protein-disulfide isomerase, at 940,719 to 941,450 _04360 AO353_04365: AO353_04365 - recombinase XerD, at 941,782 to 942,678 _04365 AO353_04370: AO353_04370 - 50S ribosomal protein L19, at 942,824 to 943,174 _04370 AO353_04375: AO353_04375 - tRNA (guanine-N1)-methyltransferase, at 943,220 to 943,972 _04375 Position (kb) 941 942 943Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 940.809 kb on - strand, within AO353_04360at 940.993 kb on + strand, within AO353_04360at 940.993 kb on + strand, within AO353_04360at 940.993 kb on + strand, within AO353_04360at 940.993 kb on + strand, within AO353_04360at 940.994 kb on - strand, within AO353_04360at 940.994 kb on - strand, within AO353_04360at 940.994 kb on - strand, within AO353_04360at 941.076 kb on + strand, within AO353_04360at 941.076 kb on + strand, within AO353_04360at 941.077 kb on - strand, within AO353_04360at 941.077 kb on - strand, within AO353_04360at 941.221 kb on + strand, within AO353_04360at 941.221 kb on + strand, within AO353_04360at 941.221 kb on + strand, within AO353_04360at 941.221 kb on + strand, within AO353_04360at 941.221 kb on + strand, within AO353_04360at 941.222 kb on - strand, within AO353_04360at 941.222 kb on - strand, within AO353_04360at 941.222 kb on - strand, within AO353_04360at 941.222 kb on - strand, within AO353_04360at 941.236 kb on + strand, within AO353_04360at 941.236 kb on + strand, within AO353_04360at 941.236 kb on + strand, within AO353_04360at 941.236 kb on + strand, within AO353_04360at 941.236 kb on + strand, within AO353_04360at 941.236 kb on + strand, within AO353_04360at 941.237 kb on - strand, within AO353_04360at 941.237 kb on - strand, within AO353_04360at 941.237 kb on - strand, within AO353_04360at 941.258 kb on - strand, within AO353_04360at 941.290 kb on + strand, within AO353_04360at 941.291 kb on - strand, within AO353_04360at 941.291 kb on - strand, within AO353_04360at 941.291 kb on - strand, within AO353_04360at 941.316 kb on - strand, within AO353_04360at 941.316 kb on - strand, within AO353_04360at 941.360 kb on + strand, within AO353_04360at 941.360 kb on + strand, within AO353_04360at 941.360 kb on + strand, within AO353_04360at 941.361 kb on - strand, within AO353_04360at 941.372 kb on + strand, within AO353_04360at 941.372 kb on + strand, within AO353_04360at 941.373 kb on - strand, within AO353_04360at 941.483 kb on + strandat 941.483 kb on + strandat 941.484 kb on - strandat 941.484 kb on - strandat 941.542 kb on + strandat 941.542 kb on + strandat 941.542 kb on + strandat 941.549 kb on + strandat 941.549 kb on + strandat 941.549 kb on + strandat 941.549 kb on + strandat 941.550 kb on - strandat 941.550 kb on - strandat 941.550 kb on - strandat 941.550 kb on - strandat 941.587 kb on + strandat 941.588 kb on - strandat 941.843 kb on + strandat 941.843 kb on + strandat 941.843 kb on + strandat 942.178 kb on + strand, within AO353_04365at 942.178 kb on + strand, within AO353_04365at 942.178 kb on + strand, within AO353_04365at 942.179 kb on - strand, within AO353_04365at 942.248 kb on + strand, within AO353_04365at 942.248 kb on + strand, within AO353_04365at 942.248 kb on + strand, within AO353_04365at 942.248 kb on + strand, within AO353_04365at 942.248 kb on + strand, within AO353_04365at 942.249 kb on - strand, within AO353_04365at 942.422 kb on + strand, within AO353_04365at 942.422 kb on + strand, within AO353_04365at 942.429 kb on - strand, within AO353_04365at 942.429 kb on - strand, within AO353_04365at 942.462 kb on + strand, within AO353_04365at 942.463 kb on - strand, within AO353_04365at 942.476 kb on + strand, within AO353_04365at 942.476 kb on + strand, within AO353_04365at 942.477 kb on - strand, within AO353_04365at 942.477 kb on - strand, within AO353_04365at 942.477 kb on - strand, within AO353_04365at 942.590 kb on + strandat 942.652 kb on + strandat 942.652 kb on + strandat 942.652 kb on + strandat 942.679 kb on - strandat 942.699 kb on + strandat 942.699 kb on + strandat 942.700 kb on - strandat 942.700 kb on - strandat 942.700 kb on - strandat 942.719 kb on + strandat 942.719 kb on + strandat 942.719 kb on + strandat 942.719 kb on + strandat 942.720 kb on - strandat 942.720 kb on - strandat 942.720 kb on - strandat 942.720 kb on - strandat 942.720 kb on - strandat 942.763 kb on + strandat 942.763 kb on + strandat 942.763 kb on + strandat 942.763 kb on + strandat 942.763 kb on + strandat 942.763 kb on + strandat 942.763 kb on + strandat 942.763 kb on + strandat 942.764 kb on - strandat 942.764 kb on - strandat 942.764 kb on - strandat 942.764 kb on - strandat 942.876 kb on + strand, within AO353_04370at 943.222 kb on - strandat 943.222 kb on - strandat 943.222 kb on - strandat 943.222 kb on - strandat 943.222 kb on - strandat 943.222 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.125 vol%
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940,809 - AO353_04360 0.12 -0.3
940,993 + AO353_04360 0.37 -3.0
940,993 + AO353_04360 0.37 -1.9
940,993 + AO353_04360 0.37 -1.8
940,993 + AO353_04360 0.37 -0.6
940,994 - AO353_04360 0.38 -0.1
940,994 - AO353_04360 0.38 +0.4
940,994 - AO353_04360 0.38 +0.3
941,076 + AO353_04360 0.49 -1.1
941,076 + AO353_04360 0.49 -1.1
941,077 - AO353_04360 0.49 -0.7
941,077 - AO353_04360 0.49 +3.2
941,221 + AO353_04360 0.69 -0.1
941,221 + AO353_04360 0.69 -1.1
941,221 + AO353_04360 0.69 +0.2
941,221 + AO353_04360 0.69 +0.9
941,221 + AO353_04360 0.69 -0.2
941,222 - AO353_04360 0.69 +0.3
941,222 - AO353_04360 0.69 +0.4
941,222 - AO353_04360 0.69 +0.9
941,222 - AO353_04360 0.69 -0.3
941,236 + AO353_04360 0.71 -0.4
941,236 + AO353_04360 0.71 -0.4
941,236 + AO353_04360 0.71 -1.3
941,236 + AO353_04360 0.71 +0.3
941,236 + AO353_04360 0.71 -0.1
941,236 + AO353_04360 0.71 -0.8
941,237 - AO353_04360 0.71 +0.5
941,237 - AO353_04360 0.71 +1.8
941,237 - AO353_04360 0.71 +0.2
941,258 - AO353_04360 0.74 +0.9
941,290 + AO353_04360 0.78 +0.3
941,291 - AO353_04360 0.78 +1.2
941,291 - AO353_04360 0.78 +0.7
941,291 - AO353_04360 0.78 -2.3
941,316 - AO353_04360 0.82 +0.9
941,316 - AO353_04360 0.82 -2.5
941,360 + AO353_04360 0.88 -2.4
941,360 + AO353_04360 0.88 -1.7
941,360 + AO353_04360 0.88 -1.6
941,361 - AO353_04360 0.88 -0.3
941,372 + AO353_04360 0.89 +0.2
941,372 + AO353_04360 0.89 -0.1
941,373 - AO353_04360 0.89 -1.0
941,483 + +0.2
941,483 + -0.9
941,484 - -0.1
941,484 - +0.3
941,542 + +0.1
941,542 + -2.4
941,542 + -1.1
941,549 + -0.2
941,549 + -2.3
941,549 + +0.2
941,549 + -1.9
941,550 - -1.2
941,550 - -3.0
941,550 - +1.6
941,550 - +0.9
941,587 + +0.6
941,588 - -2.7
941,843 + -0.7
941,843 + -0.9
941,843 + -0.8
942,178 + AO353_04365 0.44 -1.6
942,178 + AO353_04365 0.44 -1.6
942,178 + AO353_04365 0.44 +0.2
942,179 - AO353_04365 0.44 -2.4
942,248 + AO353_04365 0.52 +0.7
942,248 + AO353_04365 0.52 -2.3
942,248 + AO353_04365 0.52 +0.3
942,248 + AO353_04365 0.52 -0.1
942,248 + AO353_04365 0.52 -1.9
942,249 - AO353_04365 0.52 -1.1
942,422 + AO353_04365 0.71 -1.7
942,422 + AO353_04365 0.71 -1.8
942,429 - AO353_04365 0.72 -0.3
942,429 - AO353_04365 0.72 -1.4
942,462 + AO353_04365 0.76 -0.8
942,463 - AO353_04365 0.76 -0.9
942,476 + AO353_04365 0.77 -0.1
942,476 + AO353_04365 0.77 -1.8
942,477 - AO353_04365 0.77 +0.4
942,477 - AO353_04365 0.77 -1.2
942,477 - AO353_04365 0.77 -2.6
942,590 + -0.7
942,652 + -0.9
942,652 + -0.6
942,652 + -0.1
942,679 - +0.2
942,699 + +1.3
942,699 + +0.0
942,700 - +0.1
942,700 - +0.7
942,700 - -1.1
942,719 + -0.1
942,719 + -0.3
942,719 + +1.2
942,719 + -1.6
942,720 - -0.1
942,720 - +2.9
942,720 - -0.2
942,720 - -0.4
942,720 - -0.8
942,763 + +0.3
942,763 + +0.1
942,763 + +0.5
942,763 + -0.2
942,763 + -0.7
942,763 + +0.3
942,763 + -0.4
942,763 + +0.5
942,764 - +0.9
942,764 - +0.6
942,764 - -0.3
942,764 - -1.3
942,876 + AO353_04370 0.15 -0.1
943,222 - +0.3
943,222 - +0.2
943,222 - -0.4
943,222 - +0.2
943,222 - -0.3
943,222 - -0.1

Or see this region's nucleotide sequence