Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3119

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3118 and DvMF_3119 are separated by 200 nucleotides DvMF_3118: DvMF_3118 - Gamma-glutamyltransferase (RefSeq), at 3,935,630 to 3,937,249 _3118 DvMF_3119: DvMF_3119 - protein of unknown function DUF181 (RefSeq), at 3,937,450 to 3,939,222 _3119 Position (kb) 3937 3938 3939 3940Strain fitness (log2 ratio) -1 0 1at 3936.541 kb on - strand, within DvMF_3118at 3936.694 kb on + strand, within DvMF_3118at 3936.782 kb on + strand, within DvMF_3118at 3936.854 kb on + strand, within DvMF_3118at 3936.955 kb on + strand, within DvMF_3118at 3936.967 kb on + strand, within DvMF_3118at 3937.183 kb on - strandat 3937.281 kb on + strandat 3937.325 kb on - strandat 3937.422 kb on + strandat 3937.630 kb on - strand, within DvMF_3119at 3937.969 kb on + strand, within DvMF_3119at 3938.788 kb on - strand, within DvMF_3119at 3938.836 kb on + strand, within DvMF_3119at 3939.105 kb on - strandat 3939.395 kb on - strandat 3939.471 kb on + strandat 3939.750 kb on + strandat 3940.153 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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3,936,541 - DvMF_3118 0.56 -0.5
3,936,694 + DvMF_3118 0.66 -0.4
3,936,782 + DvMF_3118 0.71 -0.2
3,936,854 + DvMF_3118 0.76 -0.4
3,936,955 + DvMF_3118 0.82 -0.3
3,936,967 + DvMF_3118 0.83 +0.0
3,937,183 - -0.0
3,937,281 + -0.3
3,937,325 - -0.2
3,937,422 + -0.1
3,937,630 - DvMF_3119 0.10 -0.7
3,937,969 + DvMF_3119 0.29 -0.8
3,938,788 - DvMF_3119 0.75 -0.3
3,938,836 + DvMF_3119 0.78 -1.2
3,939,105 - +0.4
3,939,395 - -0.3
3,939,471 + -0.6
3,939,750 + -0.4
3,940,153 + +0.9

Or see this region's nucleotide sequence