Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3051

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3050 and DvMF_3051 are separated by 359 nucleotidesDvMF_3051 and DvMF_3052 are separated by 397 nucleotides DvMF_3050: DvMF_3050 - excinuclease ABC, A subunit (RefSeq), at 3,848,195 to 3,851,590 _3050 DvMF_3051: DvMF_3051 - protein of unknown function DUF88 (RefSeq), at 3,851,950 to 3,853,206 _3051 DvMF_3052: DvMF_3052 - putative molybdenum ABC transporter, solute-binding protein (RefSeq), at 3,853,604 to 3,854,464 _3052 Position (kb) 3851 3852 3853 3854Strain fitness (log2 ratio) -3 -2 -1 0 1at 3851.347 kb on - strandat 3851.348 kb on + strandat 3851.665 kb on - strandat 3851.786 kb on + strandat 3851.833 kb on - strandat 3851.905 kb on - strandat 3851.905 kb on - strandat 3852.075 kb on - strandat 3852.095 kb on + strand, within DvMF_3051at 3852.095 kb on + strand, within DvMF_3051at 3852.222 kb on + strand, within DvMF_3051at 3852.492 kb on - strand, within DvMF_3051at 3852.530 kb on - strand, within DvMF_3051at 3852.764 kb on + strand, within DvMF_3051at 3852.823 kb on - strand, within DvMF_3051at 3852.883 kb on - strand, within DvMF_3051at 3852.985 kb on + strand, within DvMF_3051at 3852.993 kb on - strand, within DvMF_3051at 3853.075 kb on - strand, within DvMF_3051at 3853.087 kb on + strandat 3853.109 kb on + strandat 3853.600 kb on + strandat 3853.733 kb on - strand, within DvMF_3052at 3853.761 kb on - strand, within DvMF_3052at 3853.800 kb on - strand, within DvMF_3052at 3853.811 kb on + strand, within DvMF_3052at 3853.818 kb on - strand, within DvMF_3052at 3853.858 kb on - strand, within DvMF_3052at 3853.866 kb on + strand, within DvMF_3052at 3853.897 kb on - strand, within DvMF_3052at 3854.028 kb on + strand, within DvMF_3052

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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3,851,347 - +0.3
3,851,348 + -1.3
3,851,665 - -1.0
3,851,786 + -0.0
3,851,833 - -0.9
3,851,905 - +0.8
3,851,905 - +0.1
3,852,075 - -1.6
3,852,095 + DvMF_3051 0.12 -3.5
3,852,095 + DvMF_3051 0.12 -2.3
3,852,222 + DvMF_3051 0.22 -1.8
3,852,492 - DvMF_3051 0.43 -1.9
3,852,530 - DvMF_3051 0.46 -2.7
3,852,764 + DvMF_3051 0.65 -1.0
3,852,823 - DvMF_3051 0.69 -3.5
3,852,883 - DvMF_3051 0.74 -1.9
3,852,985 + DvMF_3051 0.82 -1.9
3,852,993 - DvMF_3051 0.83 -1.8
3,853,075 - DvMF_3051 0.89 -3.5
3,853,087 + -2.7
3,853,109 + -0.4
3,853,600 + -0.6
3,853,733 - DvMF_3052 0.15 -0.4
3,853,761 - DvMF_3052 0.18 -0.3
3,853,800 - DvMF_3052 0.23 -0.3
3,853,811 + DvMF_3052 0.24 -0.1
3,853,818 - DvMF_3052 0.25 -1.3
3,853,858 - DvMF_3052 0.30 -0.5
3,853,866 + DvMF_3052 0.30 -1.0
3,853,897 - DvMF_3052 0.34 +0.2
3,854,028 + DvMF_3052 0.49 -0.8

Or see this region's nucleotide sequence