Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2927

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2926 and garR are separated by 422 nucleotidesgarR and DvMF_2928 are separated by 79 nucleotides DvMF_2926: DvMF_2926 - beta-lactamase domain protein (RefSeq), at 3,696,045 to 3,697,706 _2926 DvMF_2927: garR - tartronate semialdehyde reductase (RefSeq), at 3,698,129 to 3,699,028 garR DvMF_2928: DvMF_2928 - Methicillin resistance protein (RefSeq), at 3,699,108 to 3,700,340 _2928 Position (kb) 3698 3699 3700Strain fitness (log2 ratio) -2 -1 0 1at 3697.270 kb on - strand, within DvMF_2926at 3697.355 kb on + strand, within DvMF_2926at 3697.453 kb on + strand, within DvMF_2926at 3697.453 kb on + strand, within DvMF_2926at 3697.680 kb on + strandat 3697.731 kb on + strandat 3697.757 kb on + strandat 3697.967 kb on - strandat 3698.126 kb on - strandat 3698.152 kb on + strandat 3698.395 kb on + strand, within garRat 3698.606 kb on - strand, within garRat 3698.818 kb on + strand, within garRat 3698.961 kb on + strandat 3698.969 kb on - strandat 3699.038 kb on - strandat 3699.076 kb on + strandat 3699.203 kb on - strandat 3699.296 kb on - strand, within DvMF_2928at 3699.323 kb on - strand, within DvMF_2928at 3699.346 kb on - strand, within DvMF_2928at 3699.352 kb on + strand, within DvMF_2928at 3699.352 kb on + strand, within DvMF_2928at 3699.392 kb on + strand, within DvMF_2928at 3699.526 kb on - strand, within DvMF_2928at 3699.562 kb on - strand, within DvMF_2928at 3699.572 kb on + strand, within DvMF_2928at 3699.651 kb on - strand, within DvMF_2928at 3699.704 kb on + strand, within DvMF_2928at 3699.712 kb on - strand, within DvMF_2928at 3699.798 kb on - strand, within DvMF_2928at 3699.849 kb on + strand, within DvMF_2928at 3699.857 kb on - strand, within DvMF_2928at 3699.869 kb on + strand, within DvMF_2928at 3699.976 kb on - strand, within DvMF_2928

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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3,697,270 - DvMF_2926 0.74 -2.5
3,697,355 + DvMF_2926 0.79 -2.0
3,697,453 + DvMF_2926 0.85 -2.3
3,697,453 + DvMF_2926 0.85 -1.0
3,697,680 + -1.3
3,697,731 + -2.1
3,697,757 + -0.5
3,697,967 - -0.2
3,698,126 - -1.3
3,698,152 + -0.3
3,698,395 + garR DvMF_2927 0.30 -0.3
3,698,606 - garR DvMF_2927 0.53 -0.6
3,698,818 + garR DvMF_2927 0.77 -0.8
3,698,961 + -0.4
3,698,969 - -0.6
3,699,038 - -0.4
3,699,076 + -0.4
3,699,203 - -0.7
3,699,296 - DvMF_2928 0.15 -0.6
3,699,323 - DvMF_2928 0.17 -0.3
3,699,346 - DvMF_2928 0.19 -0.1
3,699,352 + DvMF_2928 0.20 -0.3
3,699,352 + DvMF_2928 0.20 -0.3
3,699,392 + DvMF_2928 0.23 -0.1
3,699,526 - DvMF_2928 0.34 -0.2
3,699,562 - DvMF_2928 0.37 -0.8
3,699,572 + DvMF_2928 0.38 -0.0
3,699,651 - DvMF_2928 0.44 -1.0
3,699,704 + DvMF_2928 0.48 -0.2
3,699,712 - DvMF_2928 0.49 -1.1
3,699,798 - DvMF_2928 0.56 -0.7
3,699,849 + DvMF_2928 0.60 +0.4
3,699,857 - DvMF_2928 0.61 -0.6
3,699,869 + DvMF_2928 0.62 -0.7
3,699,976 - DvMF_2928 0.70 -0.3

Or see this region's nucleotide sequence